yegE:Quickview: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
imported>WikiEntryBot
Automated import of articles
 
touch
 
(19 intermediate revisions by 3 users not shown)
Line 1: Line 1:
<!--PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE, YOU'RE PROBABLY IN THE WRONG PLACE-->
<!--
***************************************************************************************************************************************************
*
*
*              PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE,
*                            YOU'RE PROBABLY IN THE WRONG PLACE
*
*
***************************************************************************************************************************************************
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}   
<noinclude>{{TabsTop}}   
{{Tab On|Quickview|yegE}}{{Tab|Gene|yegE}}{{Tab|Gene Product(s)|yegE}}{{Tab|Expression|yegE}}{{Tab|Evolution|yegE}}{{Tab|On One Page|yegE}}{{TabsBottom}}
{{Tab On|Quickview|yegE}}{{Tab|Gene|yegE}}{{Tab|Gene Product(s)|yegE}}{{Tab|Expression|yegE}}{{Tab|Evolution|yegE}}{{Tab|On One Page|yegE}}{{TabsBottom}}
{|
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"  
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"  
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
|}
</noinclude>
</noinclude>
<!--box uid=421aa90e079fa326b6494f812ad13e79..T469f9082e1e8d-->
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.5883.Z49b02e5fd41f5-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--
{|{{Prettytable}}
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->
{|   id="Z49b02e5fd41f5"  class=" tableEdit New_Quickview_Table" 
 
|-
|-
!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
|
||
[[yegE:Gene|''yegE]]'' (synonyms: ''ECK2061, b2067, JW2052'')<ref name='LIB:Riley_2006'/>
''yegE''
|-
|-
!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
|
||
[[yegE:Gene_Product(s)|YegE product]]<ref name='LIB:Riley_2006'/>: predicted diguanylate cyclase, GGDEF domain signalling protein<ref name='LIB:Riley_2006'/>, B2067<ref name='LIB:EcoCyc10.6'/>, YegE<ref name='LIB:EcoCyc10.6'/>
''ECK2061, b2067, JW2052''<ref name='LIB:Riley_2006'/>, JW2052''
|-
|-
!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
|
||
putative sensor-type protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
putative sensor-type protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


 
Putative c-di-GMP dual activity enzyme, function unknown<ref name='LIB:EcoGene'/>
|-
!align=left {{table_heading_style}} |Product Synonyms(s)
||
''predicted diguanylate cyclase, GGDEF domain signalling protein<ref name='LIB:Riley_2006'/>, B2067<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YegE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2061, JW2052, b2067''
|-
!align=left {{table_heading_style}} |Function from GO
||
<GO_nr />
|-
|-
!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
|
||


|-
|-
!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
|
||
transcription unit(s): [[:Category:txn_units:yegE|yegE]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:yegE|yegE]]<ref name='LIB:EcoCyc10.6'/>  
|-
|-
!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
|
||


|-
|-
|colspan='2'|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..T469f9082e1e8d&page=&pagename={{FULLPAGENAMEE}} edit table]
!align=left {{table_heading_style}} |Quick Links
||
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yegE&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12396]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120002259&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yegE&loc=MG1655%3A2141290..2144607,W3110%3A2145403..2148720,DH10B%3A2232298..2235615,REL606%3A2076472..2079777,BW2952%3A2033773..2037090]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2033773&end=2037090&gene=yegE&aa=mskqsqhvlialphpllhlvslglvsfiftlfslelsqfgtqlaplwfptsimmvafyrhagrmwpgialscslgniaasillfstsslnmtwttiniveavvgavllrkllpwynplqnladwlrlalgsaivppllggvlvvlltpgddplrafliwvlsesigalalvplgllfkphyllrhrnprllfeslltlaitltlswlsmlylpwpftfiivllmwsavrlprmeafliflttvmmvslmmaadpsllatprtylmshmpwlpfllillpanimtmvmyafraerkhisesethfrnameysaigmalvgtegqwlqtnkalcqflgysqeelrgltfqqltwpedlnkdlqqveklisgeintysmekryynrngdvvwallavslvrhtdgtplyfiaqiedinelkrteqvnqqlmeritlaneaggigiwewelkpnifswdkrmfelyeipphikpnwqvwyecvlpedrqhaekvirdslqsrspfklefritvkdgirhiralanrvlnkegeverllginmdmtevkqlnealfqekerlhitldsigeavvcidmamkitfmnpvaekmsgwtqeealgvplltvlhitfgdngplmeniysadtsrsaieqdvvlhcrsggsydvhysitplstldgsnigsvlviqdvtesrkmlrqlsysashdalthlanrasfekqlrillqtvnsthqrhalvfidldrfkavndsaghaagdallrelaslmlsmlrssdvlarlggdefglllpdcnvesarfiatriisavndyhfiwegrvhrvgasagitliddnnhqaaevmsqadiacyasknggrgrvtvyepqqaaahseraamsldeqwrmikenqlmmlahgvaspripearnlwlislklwscegeiideqtfrrsfsdpalshaldrrvfheffqqaakavaskgisislplsvaglssatlvndlleqlensplpprllhliipaeaildhaesvqklrlagcrivlsqvgrdlqifnslkanmadyllldgelcanvqgnlmdemlitiiqghaqrlgmktiagpvvlplvmdtlsgigvdliygeviadaqpldllvnssyfain]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yegE+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yegE]]&nbsp;&nbsp;
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.5883.Z49b02e5fd41f5&page=5883&pagename={{FULLPAGENAMEE}}&type=1&template=New_Quickview_Table edit table]</span> ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..T469f9082e1e8d-->
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.5883.Z49b02e5fd41f5--></protect>
{{Quickview_table_help}}
<protect><!--Quickview_notes--></protect>
<protect><!--Quickview_notes--></protect>
==Notes==
===Notes===
{{BacktoTop}}
 
A yegE null mutation partially suppresses the motility defect of a yhjH mutation;  yegE partial suppression is best at 28C, full yhjH suppression requires yegE and yedQ mutations; a yeaJ null mutation is a better yhjH suppressor at 37C; full yhjH suppression requires yegE, yedQ and yeaJ null mutations when grown at 37C (Pesavento, 2008). YegE has an N-terminal MASE1 and three PAS domains, then a diguanylate cyclase GGDEF domain, followed by a C-terminal cyclic-di-GMP phosphodiesterase EAL domain. RpoS regulon (Pesavento, 2008).<ref name='LIB:EcoGene'/>
 




<noinclude>
<noinclude>
==References==
==References==
{{BacktoTop}}
<references/>
<references/>
</noinclude>
</noinclude>

Latest revision as of 21:42, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

yegE

Gene Synonym(s)

ECK2061, b2067, JW2052[1], JW2052

Product Desc.

putative sensor-type protein[2][3]

Putative c-di-GMP dual activity enzyme, function unknown[4]

Product Synonyms(s)

predicted diguanylate cyclase, GGDEF domain signalling protein[1], B2067[2][1], YegE[2][1] , ECK2061, JW2052, b2067

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yegE[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


A yegE null mutation partially suppresses the motility defect of a yhjH mutation; yegE partial suppression is best at 28C, full yhjH suppression requires yegE and yedQ mutations; a yeaJ null mutation is a better yhjH suppressor at 37C; full yhjH suppression requires yegE, yedQ and yeaJ null mutations when grown at 37C (Pesavento, 2008). YegE has an N-terminal MASE1 and three PAS domains, then a diguanylate cyclase GGDEF domain, followed by a C-terminal cyclic-di-GMP phosphodiesterase EAL domain. RpoS regulon (Pesavento, 2008).[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=yegE:Quickview&oldid=1394895"