stpA:Quickview: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
imported>Wikientrybot
Move help links into the <above> tag inside templates.
touch
 
(15 intermediate revisions by 3 users not shown)
Line 17: Line 17:
|}
|}
</noinclude>
</noinclude>
<!--box uid=421aa90e079fa326b6494f812ad13e79.7088.Y46a9a04b21a65-->
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.7088.W49b025e6a6677-->
<!--
<!--
******************************************************************************************
******************************************************************************************
Line 24: Line 24:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  
{|   id="W49b025e6a6677" class=" tableEdit New_Quickview_Table"


|-
|-
!align=left {{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
||
||
[[stpA:Gene|''stpA]]'' (synonyms: ''ECK2663, b2669, JW2644, hnsB, rsv'')<ref name='LIB:Riley_2006'/>
''stpA''
|-
|-
!align=left {{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
||
||
[[stpA:Gene_Product(s)|StpA product]]<ref name='LIB:Riley_2006'/>: DNA binding protein, nucleoid-associated product, B2669 product, HnsB product
''ECK2663, b2669, JW2644, hnsB, rsv''<ref name='LIB:Riley_2006'/>, rsv''
|-
|-
!align=left {{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
||
||
H-NS-like DNA-binding protein with RNA chaperone activity<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
H-NS-like DNA-binding protein with RNA chaperone activity<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


RNA chaperone and DNA-binding protein; suppresses T4 td mutant<ref name='PMID:1480493'/>; modulates micF stability; forms heteromers with, and stabilzed against proteolysis by, the paralogous H-NS protein; transcriptionally repressed by H-NS<ref name='LIB:EcoGene'/>
|-
|-
!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
||
''DNA binding protein, nucleoid-associated<ref name='LIB:Riley_2006'/>, B2669<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HnsB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, StpA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2663, hnsB, JW2644, rsv, b2669''
|-
!align=left {{table_heading_style}} |Function from GO
||
<GO_nr />
|-
!align=left {{table_heading_style}} |Knock-Out Phenotype
||
||


|-
|-
!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
||
||
transcription unit(s): [[:Category:Txn_unit:stpA|stpA]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:stpA|stpA]]<ref name='LIB:EcoCyc10.6'/>  
Line 51: Line 60:
||
||


|-
!align=left {{table_heading_style}} |Quick Links
||
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=stpA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11554]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001507&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=stpA&loc=MG1655%3A2796517..2796113,W3110%3A2797151..2796747,REL606%3A2693248..2692844,DH10B%3A2888282..2887878,BW2952%3A2681925..2682329]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2681925&end=2682329&gene=stpA&aa=msvmlqslnnirtlramarefsidvleemlekfrvvtkerreeeeqqqrelaerqekistwlelmkadginpeellgnssaaapragkkrqprpakykftdvngetktwtgqgrtpkpiaqalaegkslddfli]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=stpA+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=stpA]]&nbsp;&nbsp;


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.7088.Y46a9a04b21a65&page=7088&pagename={{FULLPAGENAMEE}}&type=1&template=Quickview_table edit table] ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.7088.W49b025e6a6677&page=7088&pagename={{FULLPAGENAMEE}}&type=1&template=New_Quickview_Table edit table]</span> ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.7088.Y46a9a04b21a65-->
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.7088.W49b025e6a6677--></protect>
{{Quickview_table_help}}
{{Quickview_table_help}}
<protect><!--Quickview_notes--></protect>
<protect><!--Quickview_notes--></protect>
Line 62: Line 75:


Nucleoid-associated protein.
Nucleoid-associated protein.
StpA binds preferably unstructured RNA weakly, with mainly electrostatic interactions that promote RNA folding [[PMID:17267410|(Mayer et al. 2007)]].<ref name='LIB:EcoGene'/>
<noinclude>
<noinclude>


Latest revision as of 21:45, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

stpA

Gene Synonym(s)

ECK2663, b2669, JW2644, hnsB, rsv[1], rsv

Product Desc.

H-NS-like DNA-binding protein with RNA chaperone activity[2][3]

RNA chaperone and DNA-binding protein; suppresses T4 td mutant[4]; modulates micF stability; forms heteromers with, and stabilzed against proteolysis by, the paralogous H-NS protein; transcriptionally repressed by H-NS[5]

Product Synonyms(s)

DNA binding protein, nucleoid-associated[1], B2669[2][1], HnsB[2][1], StpA[2][1] , ECK2663, hnsB, JW2644, rsv, b2669

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): stpA[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


Nucleoid-associated protein.

StpA binds preferably unstructured RNA weakly, with mainly electrostatic interactions that promote RNA folding (Mayer et al. 2007).[5]


References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ Zhang, A & Belfort, M (1992) Nucleotide sequence of a newly-identified Escherichia coli gene, stpA, encoding an H-NS-like protein. Nucleic Acids Res. 20 6735 PubMed
  5. ↑ 5.0 5.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=stpA:Quickview&oldid=1395914"