sra:Quickview: Difference between revisions

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{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" {{Prettytable}}
{|   id="T49b02597b6f47" class=" tableEdit New_Quickview_Table"


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!align=left {{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[sra:Gene|''sra]]'' (synonyms: ''ECK1474, b1480, JW5962, rpsV'')<ref name='LIB:Riley_2006'/>
''sra''
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!align=left {{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[sra:Gene_Product(s)|Sra product]]<ref name='LIB:Riley_2006'/>: 30S ribosomal subunit protein S22 product, B1480 product, RpsV product, Protein D product
''ECK1474, b1480, JW5962, rpsV''<ref name='LIB:Riley_2006'/>, rpsV''
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!align=left {{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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30S ribosomal subunit protein S22<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
30S ribosomal subunit protein S22<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:30S ribosomal subunit|30S ribosomal subunit]]<ref name='LIB:EcoCyc10.6'/>,[[:Category:Complex:ribosome|ribosome]]<ref name='LIB:EcoCyc10.6'/>
Component of [[:Category:Complex:30S ribosomal subunit|30S ribosomal subunit]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; [[:Category:Complex:ribosome|ribosome]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


SRA (stationary-phase-induced ribosome-associated) protein; Protein D; present in copy number/ribosome = 0.1 (exp) to 0.4 (stat); previously called 30S ribosomal subunit protein S22, RpsV<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
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''30S ribosomal subunit protein S22<ref name='LIB:Riley_2006'/>, B1480<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Sra<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RpsV<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Protein D<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1474, JW5962, rpsV, b1480''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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Non-essential <ref name=PMID:17277072/>
Non-essential <ref name=PMID:17277072/>
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:bdm-sra|bdm-sra]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:sra|sra]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:bdm-sra|bdm-sra]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:sra|sra]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=sra&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11508]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001464&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=sra&loc=MG1655%3A1553987..1553850,W3110%3A1557677..1557540,DH10B%3A1644582..1644445,REL606%3A1529764..1529901,BW2952%3A1445909..1446046]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1445909&end=1446046&gene=sra&aa=mksnrqarhilgldhkisnqrkivtegdkssvvnnptgrkrpaek]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=sra+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=sra]]&nbsp;&nbsp;


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{{Quickview_table_help}}
{{Quickview_table_help}}
<protect><!--Quickview_notes--></protect>
<protect><!--Quickview_notes--></protect>
===Notes===
===Notes===
{{BacktoTop}}
{{BacktoTop}}




Latest revision as of 21:46, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

sra

Gene Synonym(s)

ECK1474, b1480, JW5962, rpsV[1], rpsV

Product Desc.

30S ribosomal subunit protein S22[2][3];

Component of 30S ribosomal subunit[2][3]; ribosome[2][3]

SRA (stationary-phase-induced ribosome-associated) protein; Protein D; present in copy number/ribosome = 0.1 (exp) to 0.4 (stat); previously called 30S ribosomal subunit protein S22, RpsV[4]

Product Synonyms(s)

30S ribosomal subunit protein S22[1], B1480[2][1], Sra[2][1], RpsV[2][1], Protein D[2][1] , ECK1474, JW5962, rpsV, b1480

Function from GO

<GO_nr />

Knock-Out Phenotype

Non-essential [5]

Regulation/Expression

transcription unit(s): bdm-sra[2], sra[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Bubunenko, M et al. (2007) Essentiality of ribosomal and transcription antitermination proteins analyzed by systematic gene replacement in Escherichia coli. J. Bacteriol. 189 2844-53 PubMed
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