glgP:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
imported>Wikientrybot
Move help links into the <above> tag inside templates.
touch
 
(9 intermediate revisions by 2 users not shown)
Line 29: Line 29:
*  
*  
****************************************************************************************** -->{{Evolution_homologs_table_help}}
****************************************************************************************** -->{{Evolution_homologs_table_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="E46ac00ff94855"  class=" tableEdit Evolution_homologs_table"   
|- {{table heading style}}
|- {{table heading style}}
!|Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
Line 249: Line 249:
From ECOO157CYC  
From ECOO157CYC  


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.50813.E46ac00ff94855&page=50813&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.50813.E46ac00ff94855&page=50813&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.50813.E46ac00ff94855-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.50813.E46ac00ff94855-->
Line 274: Line 274:
*  
*  
****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="L46ac012eb9a38"  class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
|
|
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00343 PFAM:PF00343]
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11468:SF0 PTHR11468:SF0]
|
|
   
   
|-
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53756 SUPERFAMILY:53756]
|
|-
|
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF00343 PF00343  Carbohydrate phosphorylase]
|
|-
|
[[EcoCyc]]
|
EcoCyc:EG10380
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG10380
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120000373
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB0375
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0011198
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.50813.L46ac012eb9a38&page=50813&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.50813.L46ac012eb9a38&page=50813&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.50813.L46ac012eb9a38-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.50813.L46ac012eb9a38-->
Line 303: Line 352:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="V46a84063b895e"  class=" tableEdit Links_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Name!!URL!!Comments
!|Name!!URL!!Comments


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.50813.V46a84063b895e&page=50813&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.50813.V46a84063b895e&page=50813&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.50813.V46a84063b895e-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.50813.V46a84063b895e-->
Line 315: Line 364:
==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
 
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 08:36, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000010081 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000007077 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G46970 (score: 1.000; bootstrap: 100%)
  • AT3G29320 (score: 0.379)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000015277 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000001373 (score: 0.544)
  • ENSBTAP00000006069 (score: 0.464)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00024571 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00020696 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000021097 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000021509 (score: 0.681)
  • ENSCAFP00000006518 (score: 0.539)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000013376 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040928-2 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050522-482 (score: 0.697)
  • ZDB-GENE-050522-482 (score: 0.697)
  • ZDB-CDNA-041205-2 (score: 0.371)
  • ZDB-GENE-041205-1 (score: 0.371)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0191397 (score: 1.000; bootstrap: 100%)
  • DDB0215010 (score: 0.165)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0004507 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA20213-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000013845 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000020169 (score: 0.392)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000216962 (score: 1.000; bootstrap: 100%)
  • ENSP00000216392 (score: 1.000; bootstrap: 100%)
  • ENSP00000164139 (score: 0.741)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000019247 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000029760 (score: 0.672)
  • ENSMMUP00000012061 (score: 0.606)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000007972 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000016458 (score: 0.660)
  • ENSMODP00000008261 (score: 0.555)

From Inparanoid:20070104

Mus musculus

  • MGI:97828 (score: 1.000; bootstrap: 100%)
  • MGI:97830 (score: 1.000; bootstrap: 100%)
  • MGI:97829 (score: 0.677)

From Inparanoid:20070104

Oryza gramene

  • YP_026218 (score: 0.066)
  • Q9LKJ3 (score: 1.000; bootstrap: 54%)
  • Q8LQ33 (score: 0.905)
  • Q9FPE6 (score: 0.868)
  • Q84P16 (score: 0.180)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000010744 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000006629 (score: 0.664)
  • ENSPTRP00000022865 (score: 0.225)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000028636 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000010158 (score: 0.749)
  • ENSRNOP00000009183 (score: 0.671)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YPR160W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000177048 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000180382 (score: 0.764)
  • NEWSINFRUP00000158156 (score: 0.446)
  • NEWSINFRUP00000143844 (score: 0.342)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00018999001 (score: 1.000; bootstrap: 100%)
  • GSTENP00035781001 (score: 0.530)
  • GSTENP00025010001 (score: 0.521)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000035953 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000018495 (score: 0.634)
  • ENSXETP00000027940 (score: 0.613)

From Inparanoid:20070104

Shigella flexneri

GLGP

From SHIGELLACYC

E. coli O157

GLGP

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Panther (EcoliWiki Page)

PTHR11468:SF0

Superfamily (EcoliWiki Page)

SUPERFAMILY:53756

Pfam (EcoliWiki Page)

PF00343 Carbohydrate phosphorylase

EcoCyc

EcoCyc:EG10380

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10380

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000373

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0375

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011198

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=glgP:Evolution&oldid=1391482"