amyA:Evolution: Difference between revisions

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From ECOO157CYC  
From ECOO157CYC  


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!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00128 PFAM:PF00128]
[http://pfam.janelia.org/family/PF00128 PF00128 Alpha amylase, catalytic domain]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=51011 SUPERFAMILY:51011]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=51445 SUPERFAMILY:51445]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10357:SF9 PTHR10357:SF9]
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[[EcoCyc]]
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EcoCyc:EG11387
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11387
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001354
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1360
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0006414
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
 
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 08:33, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT1G69830 (score: 1.000; bootstrap: 100%)
  • AT1G76130 (score: 0.196)
  • AT4G25000 (score: 0.153)

From Inparanoid:20070104

Oryza gramene

  • P27932 (score: 1.000; bootstrap: 100%)
  • P08117 (score: 1.000; bootstrap: 100%)
  • Q67U05 (score: 0.996)
  • Q6ZDD6 (score: 0.758)
  • P27934 (score: 0.758)
  • Q67U03 (score: 0.756)
  • P27937 (score: 0.756)
  • Q41770 (score: 0.749)
  • Q67U02 (score: 0.743)
  • Q6ZDD5 (score: 0.739)
  • P27933 (score: 0.739)
  • P27939 (score: 0.734)
  • Q03651 (score: 0.641)
  • P04063 (score: 0.634)
  • P04750 (score: 0.621)
  • O81699 (score: 0.617)
  • Q6Z317 (score: 0.616)
  • P00693 (score: 0.615)
  • P27935 (score: 0.615)
  • Q40017 (score: 0.614)
  • Q40015 (score: 0.614)
  • P17654 (score: 0.613)
  • Q5Z7T8 (score: 0.613)
  • Q6Z319 (score: 0.609)
  • Q7Y1C3 (score: 0.609)
  • O04965 (score: 0.607)
  • O81700 (score: 0.606)
  • Q40016 (score: 0.602)
  • P27941 (score: 0.596)
  • Q42504 (score: 0.588)
  • Q5QLB1 (score: 0.587)
  • O04964 (score: 0.583)
  • Q40018 (score: 0.550)
  • P04747 (score: 0.542)
  • Q5QLB2 (score: 0.392)
  • Q7XSC8 (score: 0.347)
  • Q6V7G2 (score: 0.279)
  • Q6V7E3 (score: 0.279)
  • Q4U1I8 (score: 0.190)
  • Q4U1I7 (score: 0.189)
  • P04748 (score: 0.179)
  • P04749 (score: 0.150)
  • P27940 (score: 0.101)

From Inparanoid:20070104

Shigella flexneri

AMYA

From SHIGELLACYC

E. coli O157

AMYA

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00128 Alpha amylase, catalytic domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:51011

Superfamily (EcoliWiki Page)

SUPERFAMILY:51445

Panther (EcoliWiki Page)

PTHR10357:SF9

EcoCyc

EcoCyc:EG11387

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11387

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001354

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1360

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006414

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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