ybeQ:Evolution: Difference between revisions

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<noinclude>{{TabsTop}}
<noinclude>{{TabsTop}}
{{Tab|Quickview|ybeQ}}{{Tab|Gene|ybeQ}}{{Tab|Gene Product(s)|ybeQ}}{{Tab|Expression|ybeQ}}{{Tab On|Evolution|ybeQ}}{{Tab|On One Page|ybeQ}}{{TabsBottom}}
{{Tab|Quickview|ybeQ}}{{Tab|Gene|ybeQ}}{{Tab|Gene Product(s)|ybeQ}}{{Tab|Expression|ybeQ}}{{Tab On|Evolution|ybeQ}}{{Tab|On One Page|ybeQ}}{{TabsBottom}}
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</noinclude>
==Homologs in Other Organisms==
==Homologs in Other Organisms==
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{|  id="W46aba842a0ec9"  class=" tableEdit Evolution_homologs_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
|-
|-  
|
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''Anopheles gambiae''   
''Anopheles gambiae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Apis mellifera''   
''Apis mellifera''   
Line 31: Line 46:
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Bos taurus''   
''Bos taurus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
Line 54: Line 69:
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Danio rerio''   
''Danio rerio''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Gallus gallus''   
''Gallus gallus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Homo sapiens''   
''Homo sapiens''   
Line 120: Line 135:
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Macaca mulatta''   
''Macaca mulatta''   
Line 128: Line 143:
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
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''Monodelphis domestica''   
''Monodelphis domestica''   
Line 136: Line 151:
|
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
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''Mus musculus''   
''Mus musculus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Pan troglodytes''   
''Pan troglodytes''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Rattus norvegicus''   
''Rattus norvegicus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
Line 182: Line 197:
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Takifugu rubripes''   
''Takifugu rubripes''   
Line 189: Line 204:
|
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
Line 196: Line 211:
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
From SHIGELLACYC  
|-class='sortbottom'
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|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..S46a06f4f5bc03&page=&pagename={{FULLPAGENAMEE}} edit table] || ||
|
''E. coli'' O157
|
YBEQ
|
From ECOO157CYC
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.45261.W46aba842a0ec9&page=45261&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table]</span> || ||
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{{Evolution_homologs_table_help}}


===Do-It-Yourself Web Tools===
<protect><!--Families_notes--></protect>
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_415177&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
 
<protect><!--Homology_notes--></protect>
===Notes===
===Notes===


==Families==
==Families==
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{|  id="M4c604ef941d0e"  class=" tableEdit Evolution_families_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Database!!Accession!!Notes
|-
|-  
|
|
''Anopheles gambiae'' 
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
* ENSANGP00000019196 (score: 1.000; bootstrap: 100%)
[http://pfam.janelia.org/family/PF08238 PF08238  Sel1 repeat]
|
|
From Inparanoid:20070104
|-
|-  
|
|
''Apis mellifera'' 
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
* ENSAPMP00000032810 (score: 1.000; bootstrap: 99%)
[http://pfam.janelia.org/family/PF08238 PF08238  Sel1 repeat]
|
|
From Inparanoid:20070104
|-
|-  
|
|
''Arabidopsis thaliana'' 
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
* AT1G18260 (score: 1.000; bootstrap: 84%)
[http://pfam.janelia.org/family/PF08238 PF08238  Sel1 repeat]
* AT1G73570 (score: 0.682)
|
|
From Inparanoid:20070104
|-
|-  
|
|
''Bos taurus'' 
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
* ENSBTAP00000010628 (score: 1.000; bootstrap: 91%)
[http://pfam.janelia.org/family/PF08238 PF08238  Sel1 repeat]
* ENSBTAP00000026798 (score: 0.457)
|
|
From Inparanoid:20070104
|-
|-  
|
|
''Caenorhabditis briggsae'' 
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
* WBGene00041866 (score: 1.000; bootstrap: 100%)
[http://pfam.janelia.org/family/PF08238 PF08238  Sel1 repeat]
|
|
From Inparanoid:20070104
|-
|-  
|
|
''Caenorhabditis elegans'' 
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
* WBGene00004759 (score: 1.000; bootstrap: 100%)
[http://pfam.janelia.org/family/PF08238 PF08238  Sel1 repeat]
|
|
From Inparanoid:20070104
|-
|-  
|
|
''Canis familiaris'' 
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
* ENSCAFP00000025521 (score: 1.000; bootstrap: 91%)
[http://pfam.janelia.org/family/PF08238 PF08238  Sel1 repeat]
* ENSCAFP00000008314 (score: 0.356)
|
|
From Inparanoid:20070104
|-
|-  
|
|
''Ciona intestinalis'' 
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
* ENSCINP00000014215 (score: 1.000; bootstrap: 100%)
[http://pfam.janelia.org/family/PF08238 PF08238  Sel1 repeat]
|
|
From Inparanoid:20070104
   
|-
 
|
|- class="tableEdit_footer"
''Danio rerio''  
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.45261.M4c604ef941d0e&page=45261&pagename={{FULLPAGENAMEE}}&type=0&template=Evolution_families_table edit table]</span> || ||
|
* ZDB-GENE-041001-122 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Dictyostelium discoideum'' 
|
* DDB0190258 (score: 1.000; bootstrap: 76%)
* DDB0190259 (score: 0.389)
|
From Inparanoid:20070104
|-
|
''Drosophila melanogaster'' 
|
* FBgn0028475 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Drosophila pseudoobscura'' 
|
* GA10167-PA (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Gallus gallus'' 
|
* ENSGALP00000017201 (score: 1.000; bootstrap: 95%)
|
From Inparanoid:20070104
|-
|
''Homo sapiens'' 
|
* ENSP00000337053 (score: 1.000; bootstrap: 91%)
* ENSP00000284951 (score: 0.327)
|
From Inparanoid:20070104
|-
|
''Macaca mulatta'' 
|
* ENSMMUP00000013095 (score: 1.000; bootstrap: 91%)
* ENSMMUP00000002941 (score: 0.297)
|
From Inparanoid:20070104
|-
|
''Monodelphis domestica'' 
|
* ENSMODP00000004548 (score: 1.000; bootstrap: 87%)
* ENSMODP00000006431 (score: 0.311)
|
From Inparanoid:20070104
|-
|
''Mus musculus'' 
|
* MGI:1329016 (score: 1.000; bootstrap: 93%)
* MGI:2684964 (score: 0.354)
|
From Inparanoid:20070104
|-
|
''Oryza gramene'' 
|
* Q7XKU0 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Pan troglodytes'' 
|
* ENSPTRP00000011221 (score: 1.000; bootstrap: 91%)
* ENSPTRP00000040464 (score: 0.323)
|
From Inparanoid:20070104
|-
|
''Rattus norvegicus'' 
|
* ENSRNOP00000036379 (score: 1.000; bootstrap: 91%)
* ENSRNOP00000006143 (score: 0.458)
|
From Inparanoid:20070104
|-
|
''Saccharomyces cerevisiae'' 
|
* YBL061C (score: 1.000; bootstrap: 100%)
* YER096W (score: 0.149)
|
From Inparanoid:20070104
|-
|
''Schizosaccharomyces pombe'' 
|
* SPAC24B110c (score: 1.000; bootstrap: 49%)
|
From Inparanoid:20070104
|-
|
''Takifugu rubripes'' 
|
* NEWSINFRUP00000140353 (score: 1.000; bootstrap: 80%)
|
From Inparanoid:20070104
|-
|
''Tetraodon nigroviridis'' 
|
* GSTENP00026546001 (score: 1.000; bootstrap: 57%)
|
From Inparanoid:20070104
|-
|
''Xenopus tropicalis'' 
|
* ENSXETP00000013946 (score: 1.000; bootstrap: 52%)
|
From Inparanoid:20070104
|-
|
''Shigella flexneri'' 
|
YBEQ
|
From SHIGELLACYC
|-
|
''E. coli'' O157
|
YBEQ
|
From ECOO157CYC
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..S46a06f4f5bc03&page=&pagename={{FULLPAGENAMEE}} edit table] || ||
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{{Evolution_families_table_help}}
<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===




==Links==
==Links==
{{Evolution_links_default}}
{{BacktoTop}}
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==References==
==References==
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
[[Category:Genes with homologs in Anopheles gambiae ]][[Category:Genes with homologs in Apis mellifera ]][[Category:Genes with homologs in Arabidopsis thaliana ]][[Category:Genes with homologs in Bos taurus ]][[Category:Genes with homologs in Caenorhabditis briggsae ]][[Category:Genes with homologs in Caenorhabditis elegans ]][[Category:Genes with homologs in Canis familiaris ]][[Category:Genes with homologs in Ciona intestinalis ]][[Category:Genes with homologs in Danio rerio ]][[Category:Genes with homologs in Dictyostelium discoideum ]][[Category:Genes with homologs in Drosophila melanogaster ]][[Category:Genes with homologs in Drosophila pseudoobscura ]][[Category:Genes with homologs in Gallus gallus ]][[Category:Genes with homologs in Homo sapiens ]][[Category:Genes with homologs in Macaca mulatta ]][[Category:Genes with homologs in Monodelphis domestica ]][[Category:Genes with homologs in Mus musculus ]][[Category:Genes with homologs in Oryza gramene ]][[Category:Genes with homologs in Pan troglodytes ]][[Category:Genes with homologs in Rattus norvegicus ]][[Category:Genes with homologs in Saccharomyces cerevisiae ]][[Category:Genes with homologs in Schizosaccharomyces pombe ]][[Category:Genes with homologs in Takifugu rubripes ]][[Category:Genes with homologs in Tetraodon nigroviridis ]][[Category:Genes with homologs in Xenopus tropicalis ]][[Category:Genes with homologs in Shigella flexneri ]][[Category:Genes with homologs in E. coli O157]]</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Genes with homologs in Anopheles gambiae ]]
[[Category:Genes with homologs in Apis mellifera ]]
[[Category:Genes with homologs in Arabidopsis thaliana ]]
[[Category:Genes with homologs in Bos taurus ]]
[[Category:Genes with homologs in Caenorhabditis briggsae ]]
[[Category:Genes with homologs in Caenorhabditis elegans ]]
[[Category:Genes with homologs in Canis familiaris ]]
[[Category:Genes with homologs in Ciona intestinalis ]]
[[Category:Genes with homologs in Danio rerio ]]
[[Category:Genes with homologs in Dictyostelium discoideum ]]
[[Category:Genes with homologs in Drosophila melanogaster ]]
[[Category:Genes with homologs in Drosophila pseudoobscura ]]
[[Category:Genes with homologs in Gallus gallus ]]
[[Category:Genes with homologs in Homo sapiens ]]
[[Category:Genes with homologs in Macaca mulatta ]]
[[Category:Genes with homologs in Monodelphis domestica ]]
[[Category:Genes with homologs in Mus musculus ]]
[[Category:Genes with homologs in Oryza gramene ]]
[[Category:Genes with homologs in Pan troglodytes ]]
[[Category:Genes with homologs in Rattus norvegicus ]]
[[Category:Genes with homologs in Saccharomyces cerevisiae ]]
[[Category:Genes with homologs in Schizosaccharomyces pombe ]]
[[Category:Genes with homologs in Takifugu rubripes ]]
[[Category:Genes with homologs in Tetraodon nigroviridis ]]
[[Category:Genes with homologs in Xenopus tropicalis ]]
[[Category:Genes with homologs in Shigella flexneri ]]
[[Category:Genes with homologs in E. coli O157]]

Latest revision as of 20:12, 16 August 2011

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000019196 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000032810 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G18260 (score: 1.000; bootstrap: 84%)
  • AT1G73570 (score: 0.682)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000010628 (score: 1.000; bootstrap: 91%)
  • ENSBTAP00000026798 (score: 0.457)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00041866 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00004759 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000025521 (score: 1.000; bootstrap: 91%)
  • ENSCAFP00000008314 (score: 0.356)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000014215 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-041001-122 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0190258 (score: 1.000; bootstrap: 76%)
  • DDB0190259 (score: 0.389)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0028475 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA10167-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000017201 (score: 1.000; bootstrap: 95%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000337053 (score: 1.000; bootstrap: 91%)
  • ENSP00000284951 (score: 0.327)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000013095 (score: 1.000; bootstrap: 91%)
  • ENSMMUP00000002941 (score: 0.297)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000004548 (score: 1.000; bootstrap: 87%)
  • ENSMODP00000006431 (score: 0.311)

From Inparanoid:20070104

Mus musculus

  • MGI:1329016 (score: 1.000; bootstrap: 93%)
  • MGI:2684964 (score: 0.354)

From Inparanoid:20070104

Oryza gramene

  • Q7XKU0 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000011221 (score: 1.000; bootstrap: 91%)
  • ENSPTRP00000040464 (score: 0.323)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000036379 (score: 1.000; bootstrap: 91%)
  • ENSRNOP00000006143 (score: 0.458)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YBL061C (score: 1.000; bootstrap: 100%)
  • YER096W (score: 0.149)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC24B110c (score: 1.000; bootstrap: 49%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000140353 (score: 1.000; bootstrap: 80%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00026546001 (score: 1.000; bootstrap: 57%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000013946 (score: 1.000; bootstrap: 52%)

From Inparanoid:20070104

Shigella flexneri

YBEQ

From SHIGELLACYC

E. coli O157

YBEQ

From ECOO157CYC

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Notes

Families

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See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Database Accession Notes

Pfam (EcoliWiki Page)

PF08238 Sel1 repeat

Pfam (EcoliWiki Page)

PF08238 Sel1 repeat

Pfam (EcoliWiki Page)

PF08238 Sel1 repeat

Pfam (EcoliWiki Page)

PF08238 Sel1 repeat

Pfam (EcoliWiki Page)

PF08238 Sel1 repeat

Pfam (EcoliWiki Page)

PF08238 Sel1 repeat

Pfam (EcoliWiki Page)

PF08238 Sel1 repeat

Pfam (EcoliWiki Page)

PF08238 Sel1 repeat


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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