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{{Tab On|Quickview|ynfE}}{{Tab|Gene|ynfE}}{{Tab|Gene Product(s)|ynfE}}{{Tab|Expression|ynfE}}{{Tab|Evolution|ynfE}}{{Tab|On One Page|ynfE}}{{TabsBottom}}
{{Tab On|Quickview|ynfE}}{{Tab|Gene|ynfE}}{{Tab|Gene Product(s)|ynfE}}{{Tab|Expression|ynfE}}{{Tab|Evolution|ynfE}}{{Tab|On One Page|ynfE}}{{TabsBottom}}
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|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[ynfE:Gene|''ynfE]]'' (synonyms: ''ECK1582, b1587, JW1579'')<ref name='LIB:Riley_2006'/>
''ynfE''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[ynfE:Gene_Product(s)|YnfE product]]<ref name='LIB:Riley_2006'/>: oxidoreductase subunit<ref name='LIB:Riley_2006'/>, B1587<ref name='LIB:EcoCyc10.6'/>, YnfE<ref name='LIB:EcoCyc10.6'/>, [[:Category:Complex:dimethyl sulfoxide reductase paralogue|dimethyl sulfoxide reductase paralogue]]<ref name='LIB:EcoCyc11.1'/>
''ECK1582, b1587, JW1579''<ref name='LIB:Riley_2006'/>, JW1579''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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oxidoreductase subunit paralog of DmsA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
oxidoreductase subunit paralog of DmsA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:dimethyl sulfoxide reductase paralogue|dimethyl sulfoxide reductase paralogue]]<ref name='LIB:EcoCyc11.1'/>


Putative periplasmic reductase, function unknown<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''oxidoreductase subunit<ref name='LIB:Riley_2006'/>, B1587<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YnfE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1582, JW1579, b1587''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:txn_units:ynfEFGH-dmsD|ynfEFGH-dmsD]]<ref name='LIB:EcoCyc10.6'/>, ynfEFGHI  
transcription unit(s): [[:Category:Txn_unit:ynfEFGH-dmsD|ynfEFGH-dmsD]]<ref name='LIB:EcoCyc10.6'/>, ynfEFGHI  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ynfE&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6845]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003434&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ynfE&loc=MG1655%3A1656093..1658519,W3110%3A1659783..1662209,DH10B%3A1747054..1749480,REL606%3A1635264..1637690,BW2952%3A1548152..1550578]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1548152&end=1550578&gene=ynfE&aa=msknermvgisrrtlvkstaigslalaaggfslpftlrnaaaavqqarekvvwgacsvncgsrcalrlhvkdnevtwvetdntgsdeygnhqvraclrgrsirrrinhpdrlnypmkrvgkrgegkferiswdealdtiasslkktveqygneavyiqyssgivggnmtrsspsasavkrlmncyggslnqygsystaqiscampytygsndgnsttdiensklvvmfgnnpaetrmsgggityllekareksnakmividprytdtaagredewlpirpgtdaalvagiawvlinenlvdqpfldkycvgydektlpadapknghykayilgegddktaktpqwasqitgipedriiklareigtakpayicqgwgpqrqangeltaraiamlpiltgnvgisggnsgarestytitierlpvldnpvktsiscfswtdaidhgpqmtairdgvrgkdkldvpikfiwnyagntlvnqhsdinktheilqdeskcemivvienfmtssakyadillpdlmtveqediipndyagnmgyliflqpvtsekferkpiywilsevakrlgpdvyqkftegrtqeqwlqhlyakmlakdpalpsydelkkmgiykrkdpnghfvaykafrddpeanplktpsgkieiyssrlaeiartwelekdevisplpvyastfegwnsperrtfplqlfgfhyksrthstygnidllkaacrqevwinpidaqkrgiangdmvrvfnhrgevrlpakvtprilpgvsamgqgawheanmsgdkidhggcvntlttlrpsplakgnpqhtnlveieki]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ynfE+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ynfE]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
{{BacktoTop}}
 
DmsA and YnfE are paralogs that intefere with YnfFGH assembly. AFMB Structural Genomics target No. (http://afmb.cnrs-mrs.fr/article171.html). Verified Tat substrate: YnfE has a Tat-only (Class I) predicted 42 aa signal peptide (Tullman-Ercek, 2007).<ref name='LIB:EcoGene'/>
 




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==References==
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Latest revision as of 21:39, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

ynfE

Gene Synonym(s)

ECK1582, b1587, JW1579[1], JW1579

Product Desc.

oxidoreductase subunit paralog of DmsA[2][3];

Component of dimethyl sulfoxide reductase paralogue[3]

Putative periplasmic reductase, function unknown[4]

Product Synonyms(s)

oxidoreductase subunit[1], B1587[2][1], YnfE[2][1] , ECK1582, JW1579, b1587

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ynfEFGH-dmsD[2], ynfEFGHI

Regulation/Activity
Quick Links



        

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Notes

[back to top]


DmsA and YnfE are paralogs that intefere with YnfFGH assembly. AFMB Structural Genomics target No. (http://afmb.cnrs-mrs.fr/article171.html). Verified Tat substrate: YnfE has a Tat-only (Class I) predicted 42 aa signal peptide (Tullman-Ercek, 2007).[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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