sra:Quickview: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
imported>WikiEntryBot
Automated import of articles
 
touch
 
(20 intermediate revisions by 4 users not shown)
Line 1: Line 1:
<!--PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE, YOU'RE PROBABLY IN THE WRONG PLACE-->
<!--
***************************************************************************************************************************************************
*
*
*              PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE,
*                            YOU'RE PROBABLY IN THE WRONG PLACE
*
*
***************************************************************************************************************************************************
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}   
<noinclude>{{TabsTop}}   
{{Tab On|Quickview|sra}}{{Tab|Gene|sra}}{{Tab|Gene Product(s)|sra}}{{Tab|Expression|sra}}{{Tab|Evolution|sra}}{{Tab|On One Page|sra}}{{TabsBottom}}
{{Tab On|Quickview|sra}}{{Tab|Gene|sra}}{{Tab|Gene Product(s)|sra}}{{Tab|Expression|sra}}{{Tab|Evolution|sra}}{{Tab|On One Page|sra}}{{TabsBottom}}
{|
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"  
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"  
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
|}
</noinclude>
</noinclude>
<!--box uid=421aa90e079fa326b6494f812ad13e79..O469f9048477d4-->
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.4711.T49b02597b6f47-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--
{|{{Prettytable}}
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->
{|   id="T49b02597b6f47"  class=" tableEdit New_Quickview_Table" 
 
|-
|-
!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
|
||
[[sra:Gene|''sra]]'' (synonyms: ''ECK1474, b1480, JW5962, rpsV'')<ref name='LIB:Riley_2006'/>
''sra''
|-
|-
!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
|
||
[[sra:Gene_Product(s)|Sra product]]<ref name='LIB:Riley_2006'/>: 30S ribosomal subunit protein S22<ref name='LIB:Riley_2006'/>, B1480<ref name='LIB:EcoCyc10.6'/>, Sra<ref name='LIB:EcoCyc10.6'/>, RpsV<ref name='LIB:EcoCyc10.6'/>, Protein D<ref name='LIB:EcoCyc10.6'/>, [[:Category:Complex:30S ribosomal subunit|30S ribosomal subunit]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Complex:ribosome|ribosome]]<ref name='LIB:EcoCyc10.6'/>
''ECK1474, b1480, JW5962, rpsV''<ref name='LIB:Riley_2006'/>, rpsV''
|-
|-
!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
|
||
30S ribosomal subunit protein S22<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
30S ribosomal subunit protein S22<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:30S ribosomal subunit|30S ribosomal subunit]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; [[:Category:Complex:ribosome|ribosome]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


SRA (stationary-phase-induced ribosome-associated) protein; Protein D; present in copy number/ribosome = 0.1 (exp) to 0.4 (stat); previously called 30S ribosomal subunit protein S22, RpsV<ref name='LIB:EcoGene'/>
|-
|-
!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
|
||
 
''30S ribosomal subunit protein S22<ref name='LIB:Riley_2006'/>, B1480<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Sra<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RpsV<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Protein D<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1474, JW5962, rpsV, b1480''
|-
!align=left {{table_heading_style}} |Function from GO
||
<GO_nr />
|-
!align=left {{table_heading_style}} |Knock-Out Phenotype
||
Non-essential <ref name=PMID:17277072/>
|-
|-
!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
|
||
transcription unit(s): [[:Category:txn_units:bdm-sra|bdm-sra]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:txn_units:sra|sra]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:bdm-sra|bdm-sra]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:sra|sra]]<ref name='LIB:EcoCyc10.6'/>  
|-
|-
!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
|
||


|-
|-
|colspan='2'|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..O469f9048477d4&page=&pagename={{FULLPAGENAMEE}} edit table]
!align=left {{table_heading_style}} |Quick Links
||
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=sra&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11508]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001464&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=sra&loc=MG1655%3A1553987..1553850,W3110%3A1557677..1557540,DH10B%3A1644582..1644445,REL606%3A1529764..1529901,BW2952%3A1445909..1446046]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1445909&end=1446046&gene=sra&aa=mksnrqarhilgldhkisnqrkivtegdkssvvnnptgrkrpaek]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=sra+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=sra]]&nbsp;&nbsp;
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.4711.T49b02597b6f47&page=4711&pagename={{FULLPAGENAMEE}}&type=1&template=New_Quickview_Table edit table]</span> ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..O469f9048477d4-->
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.4711.T49b02597b6f47--></protect>
{{Quickview_table_help}}
<protect><!--Quickview_notes--></protect>
<protect><!--Quickview_notes--></protect>
==Notes==
===Notes===
{{BacktoTop}}
 
 
 




<noinclude>
<noinclude>
==References==
==References==
{{BacktoTop}}
<references/>
<references/>
</noinclude>
</noinclude>

Latest revision as of 21:46, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

sra

Gene Synonym(s)

ECK1474, b1480, JW5962, rpsV[1], rpsV

Product Desc.

30S ribosomal subunit protein S22[2][3];

Component of 30S ribosomal subunit[2][3]; ribosome[2][3]

SRA (stationary-phase-induced ribosome-associated) protein; Protein D; present in copy number/ribosome = 0.1 (exp) to 0.4 (stat); previously called 30S ribosomal subunit protein S22, RpsV[4]

Product Synonyms(s)

30S ribosomal subunit protein S22[1], B1480[2][1], Sra[2][1], RpsV[2][1], Protein D[2][1] , ECK1474, JW5962, rpsV, b1480

Function from GO

<GO_nr />

Knock-Out Phenotype

Non-essential [5]

Regulation/Expression

transcription unit(s): bdm-sra[2], sra[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]





References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Bubunenko, M et al. (2007) Essentiality of ribosomal and transcription antitermination proteins analyzed by systematic gene replacement in Escherichia coli. J. Bacteriol. 189 2844-53 PubMed
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=sra:Quickview&oldid=1395944"