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{{Tab On|Quickview|ybhA}}{{Tab|Gene|ybhA}}{{Tab|Gene Product(s)|ybhA}}{{Tab|Expression|ybhA}}{{Tab|Evolution|ybhA}}{{Tab|On One Page|ybhA}}{{TabsBottom}}
{{Tab On|Quickview|ybhA}}{{Tab|Gene|ybhA}}{{Tab|Gene Product(s)|ybhA}}{{Tab|Expression|ybhA}}{{Tab|Evolution|ybhA}}{{Tab|On One Page|ybhA}}{{TabsBottom}}
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|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[ybhA:Gene|''ybhA]]'' (synonyms: ''ECK0755, b0766, JW0749, modD'')<ref name='LIB:Riley_2006'/>
''ybhA''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[ybhA:Gene_Product(s)|YbhA product]]<ref name='LIB:Riley_2006'/>: predicted hydrolase<ref name='LIB:Riley_2006'/>, YbhA<ref name='LIB:EcoCyc10.6'/>, B0766<ref name='LIB:EcoCyc10.6'/>, fructose 1,6-bisphosphatase III<ref name='LIB:EcoCyc10.6'/>
''ECK0755, b0766, JW0749, modD''<ref name='LIB:Riley_2006'/>, modD''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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EG11239-MONOMER<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
EG11239<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
 


Pyridoxal phosphate (PLP) phosphatase; phosphoramidase; physiological role unknown; HAD14<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted hydrolase<ref name='LIB:Riley_2006'/>, YbhA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B0766<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, fructose 1,6-bisphosphatase III<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0755, JW0749, modD, b0766''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:txn_units:ybhA|ybhA]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ybhA|ybhA]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ybhA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11239]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001217&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ybhA&loc=MG1655%3A797654..796836,W3110%3A798853..798035,DH10B%3A851582..850764,REL606%3A779060..778242,BW2952%3A699804..700622]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=699804&end=700622&gene=ybhA&aa=mttrvialdldgtlltpkktllpssiealarareagyqliivtgrhhvaihpfyqalaldtpaiccngtylydyhaktvleadpmpvikalqliemlnehhihglmyvddamvyehptghvirtsnwaqtlppeqrptftqvaslaetaqqvnavwkfalthddlpqlqhfgkhvehelglecewswhdqvdiarggnskgkrltkwveaqgwsmenvvafgdnfndismleaagtgvamgnaddavkaranivigdnttdsiaqfiyshli]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ybhA+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ybhA]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
{{BacktoTop}}
 
HAD superfamily. In vitro activities demonstrated by Kuznetsova et al. (2005, 2006). ybhA is a non-essential gene.<ref name='LIB:EcoGene'/>
 
HAD refers to the haloacid dehalogenase-like (HAD) family of proteins.<ref name='PMID:7966317'/>.
 




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==References==
==References==
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Latest revision as of 21:44, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

ybhA

Gene Synonym(s)

ECK0755, b0766, JW0749, modD[1], modD

Product Desc.

EG11239[2][3]

Pyridoxal phosphate (PLP) phosphatase; phosphoramidase; physiological role unknown; HAD14[4]

Product Synonyms(s)

predicted hydrolase[1], YbhA[2][1], B0766[2][1], fructose 1,6-bisphosphatase III[2][1] , ECK0755, JW0749, modD, b0766

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ybhA[2]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


HAD superfamily. In vitro activities demonstrated by Kuznetsova et al. (2005, 2006). ybhA is a non-essential gene.[4]

HAD refers to the haloacid dehalogenase-like (HAD) family of proteins.[5].



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Koonin, EV & Tatusov, RL (1994) Computer analysis of bacterial haloacid dehalogenases defines a large superfamily of hydrolases with diverse specificity. Application of an iterative approach to database search. J. Mol. Biol. 244 125-32 PubMed
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