ubiF:Quickview: Difference between revisions

Latest revision as of 21:45, 27 May 2013

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Quickview

Gene

Standard Name	ubiF
Gene Synonym(s)	ECK0654, b0662, JW0659, yleB, G211^[1]^[2]
Product Desc.	OCTAPRENYL-METHYL-METHOXY-BENZOQ-OH-MON^[2]^[3] 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; produces 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol; required for ubiquinone synthesis; mutation confers resistance to bleomycin, phleomycin and heat^[4]
Product Synonyms(s)	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol oxygenase^[1], B0662^[2]^[1], YleB^[2]^[1], UbiF^[2]^[1] , ECK0654, JW0659, yleB, b0662
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): ubiF^[2]
Regulation/Activity
Quick Links
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Notes

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visC, ubiH, ubiF and mhpA are paralogs.^[4]

References

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↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

[LIB:Riley_2006-1] 1.0 ^1.1 ^1.2 ^1.3 ^1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)

[LIB:EcoCyc10.6-2] 2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoCyc11.1-3] EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoGene-4] 4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

[1]

[2]

[3]

[4]

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+-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
 <noinclude>{{TabsTop}}
 {{Tab On|Quickview|ubiF}}{{Tab|Gene|ubiF}}{{Tab|Gene Product(s)|ubiF}}{{Tab|Expression|ubiF}}{{Tab|Evolution|ubiF}}{{Tab|On One Page|ubiF}}{{TabsBottom}}
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+{|   id="O49b027a1c22b9"  class=" tableEdit New_Quickview_Table"
 |-
-!{{table_heading_style}} |Gene Name
+!align=left {{table_heading_style}} |Standard Name
-|
+||
-[[ubiF:Gene|''ubiF]]'' (synonyms: ''ECK0654, b0662, JW0659, yleB, G211'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
+''ubiF''
 |-
-!{{table_heading_style}} |Product(s)
+!align=left {{table_heading_style}} |Gene Synonym(s)
-|
+||
-[[ubiF:Gene_Product(s)|UbiF product]]<ref name='LIB:Riley_2006'/>: 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol oxygenase<ref name='LIB:Riley_2006'/>, B0662<ref name='LIB:EcoCyc10.6'/>, YleB<ref name='LIB:EcoCyc10.6'/>, UbiF<ref name='LIB:EcoCyc10.6'/>
+''ECK0654, b0662, JW0659, yleB, G211''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
 |-
-!{{table_heading_style}} |Description
+!align=left {{table_heading_style}} |Product Desc.
-|
+||
 OCTAPRENYL-METHYL-METHOXY-BENZOQ-OH-MON<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
+-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; produces 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol; required for ubiquinone synthesis; mutation confers resistance to bleomycin, phleomycin and heat<ref name='LIB:EcoGene'/>
+|-
+!align=left {{table_heading_style}} |Product Synonyms(s)
+||
+''2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol oxygenase<ref name='LIB:Riley_2006'/>, B0662<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YleB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, UbiF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0654, JW0659, yleB, b0662''
+|-
+!align=left {{table_heading_style}} |Function from GO
+||
+<GO_nr />
 |-
-!{{table_heading_style}} |Knock-Out Phenotype
+!align=left {{table_heading_style}} |Knock-Out Phenotype
-|
+||
 |-
-!{{table_heading_style}} |Regulation/Expression
+!align=left {{table_heading_style}} |Regulation/Expression
-|
+||
-transcription unit(s): [[:Category:txn_units:ubiF|ubiF]]<ref name='LIB:EcoCyc10.6'/>
+transcription unit(s): [[:Category:Txn_unit:ubiF|ubiF]]<ref name='LIB:EcoCyc10.6'/>
 |-
-!{{table_heading_style}} |Regulation/Activity
+!align=left {{table_heading_style}} |Regulation/Activity
-|
+||
 |-
-|colspan='2'|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..A469f8ff76e8e1&page=&pagename={{FULLPAGENAMEE}} edit table]
+!align=left {{table_heading_style}} |Quick Links
+||
+[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ubiF&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6365]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120002972&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ubiF&loc=MG1655%3A694324..695499,W3110%3A695523..696698,DH10B%3A746916..748091,REL606%3A677196..678371,BW2952%3A597084..598259]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=597084&end=598259&gene=ubiF&aa=mtnqpteiaivgggmvggalalglaqhgfavtviehaepapfvadsqpdvrisaisaasvsllkglgvwdavqamrchpyrrletwewetahvvfdaaelklpllgymventvlqqalwqaleahpkvtlrvpgslialhrhddlqelelkggeviraklvigadgansqvrqmagigvhawqyaqscmlisvqcendpgdstwqqftpdgpraflplfdnwaslvwydsparirqlqnmnmaqlqaeiakhfpsrlgyvtplaagafpltrrhalqyvqpglalvgdaahtihplagqgvnlgyrdvdalidvlvnarsygeawasypvlkryqmrrmadnfimqsgmdlfyagfsnnlpplrfmrnlglmaaeragvlkrqalkyalgl]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ubiF+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ubiF]]&nbsp;&nbsp;
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 <protect><!--Quickview_notes--></protect>
-==Notes==
+===Notes===
+{{BacktoTop}}
+visC, ubiH, ubiF and mhpA are paralogs.<ref name='LIB:EcoGene'/>
 <noinclude>
 ==References==
+{{BacktoTop}}
 <references/>
 </noinclude>

ubiF:Quickview: Difference between revisions

Latest revision as of 21:45, 27 May 2013

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