ybdL:Quickview: Difference between revisions

Latest revision as of 21:44, 27 May 2013

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Quickview

Gene

Standard Name	ybdL
Gene Synonym(s)	ECK0594, b0600, JW0593^[1], JW0593
Product Desc.	methionine aminotransferase, PLP-dependent^[2]^[3] Methionine aminotransferase, PLP-dependent^[4]
Product Synonyms(s)	methionine aminotransferase, PLP-dependent^[1], B0600^[2]^[1], YbdL^[2]^[1] , ECK0594, JW0593, b0600
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): ybdL^[2]
Regulation/Activity
Quick Links
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Notes

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AFMB Structural Genomics target No. 35 (http://afmb.cnrs-mrs.fr/article171.html). Upregulated by GSNO in defined medium (aerobic). Also an aminotransferase for histidine, and weakly, phenylalanine.^[4]

References

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↑ ^1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

[LIB:Riley_2006-1] 1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)

[LIB:EcoCyc10.6-2] 2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoCyc11.1-3] EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoGene-4] 4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

[1]

[2]

[3]

[4]

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 |-
-!{{table_heading_style}} |Gene Name
+!align=left {{table_heading_style}} |Standard Name
-|
+||
-[[ybdL:Gene|''ybdL]]'' (synonyms: ''ECK0594, b0600, JW0593'')<ref name='LIB:Riley_2006'/>
+''ybdL''
 |-
-!{{table_heading_style}} |Product(s)
+!align=left {{table_heading_style}} |Gene Synonym(s)
-|
+||
-[[ybdL:Gene_Product(s)|YbdL product]]<ref name='LIB:Riley_2006'/>: methionine aminotransferase, PLP-dependent<ref name='LIB:Riley_2006'/>, B0600<ref name='LIB:EcoCyc10.6'/>, YbdL<ref name='LIB:EcoCyc10.6'/>
+''ECK0594, b0600, JW0593''<ref name='LIB:Riley_2006'/>, JW0593''
 |-
-!{{table_heading_style}} |Description
+!align=left {{table_heading_style}} |Product Desc.
-|
+||
 methionine aminotransferase, PLP-dependent<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
+Methionine aminotransferase, PLP-dependent<ref name='LIB:EcoGene'/>
+|-
+!align=left {{table_heading_style}} |Product Synonyms(s)
+||
+''methionine aminotransferase, PLP-dependent<ref name='LIB:Riley_2006'/>, B0600<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbdL<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0594, JW0593, b0600''
+|-
+!align=left {{table_heading_style}} |Function from GO
+||
+<GO_nr />
 |-
-!{{table_heading_style}} |Knock-Out Phenotype
+!align=left {{table_heading_style}} |Knock-Out Phenotype
-|
+||
 |-
-!{{table_heading_style}} |Regulation/Expression
+!align=left {{table_heading_style}} |Regulation/Expression
-|
+||
-transcription unit(s): [[:Category:txn_units:ybdL|ybdL]]<ref name='LIB:EcoCyc10.6'/>
+transcription unit(s): [[:Category:Txn_unit:ybdL|ybdL]]<ref name='LIB:EcoCyc10.6'/>
 |-
-!{{table_heading_style}} |Regulation/Activity
+!align=left {{table_heading_style}} |Regulation/Activity
-|
+||
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+!align=left {{table_heading_style}} |Quick Links
+||
+[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ybdL&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6329]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120002936&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ybdL&loc=MG1655%3A632809..633969,W3110%3A632809..633969,DH10B%3A572141..573301,DH10B%3A685401..686561,REL606%3A616283..617443,BW2952%3A535569..536729]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=535569&end=536729&gene=ybdL&aa=mtnnplipqsklpqlgttiftqmsalaqqhqainlsqgfpdfdgprylqerlahhvaqganqyapmtgvqalreaiaqkterlygyqpdadsditvtagatealyaaitalvrngdevicfdpsydsyapaialsggivkrmalqpphfrvdwqefaallsertrlvilntphnpsatvwqqadfaalwqaiagheifvisdevyehinfsqqghasvlahpqlreravavssfgktyhmtgwkvgycvapapisaeirkvhqyltfsvntpaqlaladmlraepehylalpdfyrqkrdilvnalnesrleilpcegtyfllvdysavstlddvefcqwltqehgvaaiplsvfcadpfphklirlcfakkestllaaaerlrql]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ybdL+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ybdL]]&nbsp;&nbsp;
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-==Notes==
+===Notes===
+{{BacktoTop}}
+AFMB Structural Genomics target No. 35 (http://afmb.cnrs-mrs.fr/article171.html). Upregulated by GSNO in defined medium (aerobic). Also an aminotransferase for  histidine, and weakly, phenylalanine.<ref name='LIB:EcoGene'/>
 <noinclude>
 ==References==
+{{BacktoTop}}
 <references/>
 </noinclude>

ybdL:Quickview: Difference between revisions

Latest revision as of 21:44, 27 May 2013

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