lysC:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
From SHIGELLACYC  
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
From ECOO157CYC  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF01842 PF01842  ACT domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00696 PF00696  Amino acid kinase family]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53633 SUPERFAMILY:53633]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00696 PFAM:PF00696]
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21499:SF20 PTHR21499:SF20]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=55021 SUPERFAMILY:55021]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=55021 SUPERFAMILY:55021]
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[[EcoCyc]]
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EcoCyc:EG10550
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10550
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000543
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0545
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0013156
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
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{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
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===Categories===
===Categories===
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Latest revision as of 08:37, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT5G13280 (score: 1.000; bootstrap: 100%)
  • AT3G02020 (score: 0.567)
  • AT5G14060 (score: 0.561)

From Inparanoid:20070104

Oryza gramene

  • Q6YS32 (score: 1.000; bootstrap: 100%)
  • Q6YS33 (score: 0.994)
  • Q851Z6 (score: 0.700)
  • Q5JK18 (score: 0.640)
  • Q9MAX0 (score: 0.429)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC19F54 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

LYSC

From SHIGELLACYC

E. coli O157

LYSC

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01842 ACT domain

Pfam (EcoliWiki Page)

PF00696 Amino acid kinase family

Superfamily (EcoliWiki Page)

SUPERFAMILY:53633

Panther (EcoliWiki Page)

PTHR21499:SF20

Superfamily (EcoliWiki Page)

SUPERFAMILY:55021

Superfamily (EcoliWiki Page)

SUPERFAMILY:55021

EcoCyc

EcoCyc:EG10550

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10550

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000543

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0545

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013156

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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