glgP:Evolution: Difference between revisions

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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="E46ac00ff94855"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Bos taurus''   
''Bos taurus''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
''Canis familiaris''   
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Danio rerio''   
''Danio rerio''   
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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''E. coli'' O157  
''E. coli'' O157  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11468:SF0 PTHR11468:SF0]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53756 SUPERFAMILY:53756]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00343 PFAM:PF00343]
[http://pfam.janelia.org/family/PF00343 PF00343 Carbohydrate phosphorylase]
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[[EcoCyc]]
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EcoCyc:EG10380
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10380
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000373
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0375
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0011198
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
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Latest revision as of 08:36, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000010081 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000007077 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G46970 (score: 1.000; bootstrap: 100%)
  • AT3G29320 (score: 0.379)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000015277 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000001373 (score: 0.544)
  • ENSBTAP00000006069 (score: 0.464)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00024571 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00020696 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000021097 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000021509 (score: 0.681)
  • ENSCAFP00000006518 (score: 0.539)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000013376 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040928-2 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050522-482 (score: 0.697)
  • ZDB-GENE-050522-482 (score: 0.697)
  • ZDB-CDNA-041205-2 (score: 0.371)
  • ZDB-GENE-041205-1 (score: 0.371)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0191397 (score: 1.000; bootstrap: 100%)
  • DDB0215010 (score: 0.165)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0004507 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA20213-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000013845 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000020169 (score: 0.392)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000216962 (score: 1.000; bootstrap: 100%)
  • ENSP00000216392 (score: 1.000; bootstrap: 100%)
  • ENSP00000164139 (score: 0.741)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000019247 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000029760 (score: 0.672)
  • ENSMMUP00000012061 (score: 0.606)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000007972 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000016458 (score: 0.660)
  • ENSMODP00000008261 (score: 0.555)

From Inparanoid:20070104

Mus musculus

  • MGI:97828 (score: 1.000; bootstrap: 100%)
  • MGI:97830 (score: 1.000; bootstrap: 100%)
  • MGI:97829 (score: 0.677)

From Inparanoid:20070104

Oryza gramene

  • YP_026218 (score: 0.066)
  • Q9LKJ3 (score: 1.000; bootstrap: 54%)
  • Q8LQ33 (score: 0.905)
  • Q9FPE6 (score: 0.868)
  • Q84P16 (score: 0.180)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000010744 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000006629 (score: 0.664)
  • ENSPTRP00000022865 (score: 0.225)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000028636 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000010158 (score: 0.749)
  • ENSRNOP00000009183 (score: 0.671)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YPR160W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000177048 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000180382 (score: 0.764)
  • NEWSINFRUP00000158156 (score: 0.446)
  • NEWSINFRUP00000143844 (score: 0.342)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00018999001 (score: 1.000; bootstrap: 100%)
  • GSTENP00035781001 (score: 0.530)
  • GSTENP00025010001 (score: 0.521)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000035953 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000018495 (score: 0.634)
  • ENSXETP00000027940 (score: 0.613)

From Inparanoid:20070104

Shigella flexneri

GLGP

From SHIGELLACYC

E. coli O157

GLGP

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Panther (EcoliWiki Page)

PTHR11468:SF0

Superfamily (EcoliWiki Page)

SUPERFAMILY:53756

Pfam (EcoliWiki Page)

PF00343 Carbohydrate phosphorylase

EcoCyc

EcoCyc:EG10380

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10380

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000373

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0375

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011198

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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