ybaK:Quickview: Difference between revisions

Latest revision as of 21:44, 27 May 2013

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Quickview

Gene

Standard Name	ybaK
Gene Synonym(s)	ECK0475, b0481, JW0470^[1], JW0470
Product Desc.	Cys-tRNA^Pro and Cys-tRNA^Cys deacylase^[2]^[3] Cys-tRNAPro and Cys-tRNACys deacylase, tRNA editing^[4]
Product Synonyms(s)	conserved protein^[1], B0481^[2]^[1], YbaK^[2]^[1] , ECK0475, JW0470, b0481
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): ybaK^[2]
Regulation/Activity
Quick Links
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Notes

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YbaK has weak in vitro deacylase activity against Gly-, Ala-, Ser- Pro- and Met-tRNAs. YbaK is homologous to YeaK and an insertion domain in ProS. ybaK is a non-essential gene; YbaK is a low abundance protein. otherPDB (H. influenzae): 1DBU, 1DBX.^[4]

References

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↑ ^1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

[LIB:Riley_2006-1] 1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)

[LIB:EcoCyc10.6-2] 2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoCyc11.1-3] EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoGene-4] 4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

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[2]

[3]

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+{|   id="X49b029c4a5930"  class=" tableEdit New_Quickview_Table"
 |-
-!{{table_heading_style}} |Gene Name
+!align=left {{table_heading_style}} |Standard Name
-|
+||
-[[ybaK:Gene|''ybaK]]'' (synonyms: ''ECK0475, b0481, JW0470'')<ref name='LIB:Riley_2006'/>
+''ybaK''
 |-
-!{{table_heading_style}} |Product(s)
+!align=left {{table_heading_style}} |Gene Synonym(s)
-|
+||
-[[ybaK:Gene_Product(s)|YbaK product]]<ref name='LIB:Riley_2006'/>: conserved protein<ref name='LIB:Riley_2006'/>, B0481<ref name='LIB:EcoCyc10.6'/>, YbaK<ref name='LIB:EcoCyc10.6'/>
+''ECK0475, b0481, JW0470''<ref name='LIB:Riley_2006'/>, JW0470''
 |-
-!{{table_heading_style}} |Description
+!align=left {{table_heading_style}} |Product Desc.
-|
+||
 Cys-tRNA<sup>Pro</sup> and Cys-tRNA<sup>Cys</sup> deacylase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
+Cys-tRNAPro and Cys-tRNACys deacylase, tRNA editing<ref name='LIB:EcoGene'/>
+|-
+!align=left {{table_heading_style}} |Product Synonyms(s)
+||
+''conserved protein<ref name='LIB:Riley_2006'/>, B0481<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbaK<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0475, JW0470, b0481''
+|-
+!align=left {{table_heading_style}} |Function from GO
+||
+<GO_nr />
 |-
-!{{table_heading_style}} |Knock-Out Phenotype
+!align=left {{table_heading_style}} |Knock-Out Phenotype
-|
+||
 |-
-!{{table_heading_style}} |Regulation/Expression
+!align=left {{table_heading_style}} |Regulation/Expression
-|
+||
-transcription unit(s): [[:Category:txn_units:ybaK|ybaK]]<ref name='LIB:EcoCyc10.6'/>
+transcription unit(s): [[:Category:Txn_unit:ybaK|ybaK]]<ref name='LIB:EcoCyc10.6'/>
 |-
-!{{table_heading_style}} |Regulation/Activity
+!align=left {{table_heading_style}} |Regulation/Activity
-|
+||
 |-
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+!align=left {{table_heading_style}} |Quick Links
+||
+[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ybaK&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12454]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120002303&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ybaK&loc=MG1655%3A506306..505827,W3110%3A506306..505827,DH10B%3A445637..445158,REL606%3A479149..478670,BW2952%3A408586..409065]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=408586&end=409065&gene=ybaK&aa=mtpavklleknkisfqihtyehdpaetnfgdevvkklglnpdqvyktllvavngdmkhlavavtpvagqldlkkvakalgakkvemadpmvaqrstgylvggisplgqkkrlptiidapaqefatiyvsggkrgldielaagdlakildakfadiarrd]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ybaK+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ybaK]]&nbsp;&nbsp;
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 <protect><!--Quickview_notes--></protect>
-==Notes==
+===Notes===
+{{BacktoTop}}
+YbaK has weak in vitro deacylase activity against Gly-, Ala-, Ser- Pro- and Met-tRNAs. YbaK is homologous to YeaK and an insertion domain in ProS. ybaK is a non-essential gene; YbaK is a low abundance protein. otherPDB (H. influenzae): 1DBU, 1DBX.<ref name='LIB:EcoGene'/>
 <noinclude>
 ==References==
+{{BacktoTop}}
 <references/>
 </noinclude>

ybaK:Quickview: Difference between revisions

Latest revision as of 21:44, 27 May 2013

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