deaD:Quickview: Difference between revisions

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{|   id="R49aee37295762"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[deaD:Gene|''deaD]]'' (synonyms: ''ECK3150, b3162, JW5531, mssB, rhlD'')<ref name='LIB:Riley_2006'/>
''deaD''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[deaD:Gene_Product(s)|DeaD product]]<ref name='LIB:Riley_2006'/>: ATP-dependent RNA helicase product, B3162 product, RhlD product, MssB product
''ECK3150, b3162, JW5531, mssB, rhlD''<ref name='LIB:Riley_2006'/>, csdA, rhlD''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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CsdA, DEAD-box RNA helicase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
CsdA, DEAD-box RNA helicase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Translation factor W2, putative RNA helix-destabilizer; facilitates translation of mRNAs with 5' secondary structures; multicopy suppressor of rpsB(Ts) mutations<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''ATP-dependent RNA helicase<ref name='LIB:Riley_2006'/>, B3162<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RhlD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MssB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DeaD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , csdA, ECK3150, JW5531, mssB, rhlD, b3162''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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|-
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:deaD|deaD]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:deaD|deaD]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=deaD&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10215]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000209&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=deaD&loc=MG1655%3A3305882..3303993,W3110%3A3307715..3305826,DH10B%3A3403627..3401738,REL606%3A3243094..3241205,BW2952%3A3191141..3193030]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3191141&end=3193030&gene=deaD&aa=mmsyvdwpplilrhtyymaefettfadlglkapilealndlgyekpspiqaeciphllngrdvlgmaqtgsgktaafslpllqnldpelkapqilvlaptrelavqvaeamtdfskhmrgvnvvalyggqrydvqlralrqgpqivvgtpgrlldhlkrgtldlsklsglvldeademlrmgfiedvetimaqipeghqtalfsatmpeairritrrfmkepqevriqssvttrpdisqsywtvwgmrknealvrfleaedfdaaiifvrtknatlevaealerngynsaalngdmnqalreqtlerlkdgrldiliatdvaargldverislvvnydipmdsesyvhrigrtgragragrallfvenrerrllrniertmkltipevelpnaellgkrrlekfaakvqqqlessdldqyrallskiqptaegeeldletlaaallkmaqgertlivppdapmrpkrefrdrddrgprdrndrgprgdredrprrerrdvgdmqlyrievgrddgvevrhivgaianegdissryigniklfashstielpkgmpgevlqhftrtrilnkpmnmqllgdaqphtggerrgggrgfggerreggrnfsgerreggrgdgrrfsgerregraprrddstgrrrfggda]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=deaD+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=deaD]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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Mechanism of DeaD 50S biogenesis differs from that for SrmB 50S biogenesis. stabilizes exposed mRNA, possibly by protecting or destabilizing secondary structure of RNase E sites. Cold shock-inducible; acid-inducible.<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:51, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

deaD

Gene Synonym(s)

ECK3150, b3162, JW5531, mssB, rhlD[1], csdA, rhlD

Product Desc.

CsdA, DEAD-box RNA helicase[2][3]

Translation factor W2, putative RNA helix-destabilizer; facilitates translation of mRNAs with 5' secondary structures; multicopy suppressor of rpsB(Ts) mutations[4]

Product Synonyms(s)

ATP-dependent RNA helicase[1], B3162[2][1], RhlD[2][1], MssB[2][1], DeaD[2][1] , csdA, ECK3150, JW5531, mssB, rhlD, b3162

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): deaD[2]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


Mechanism of DeaD 50S biogenesis differs from that for SrmB 50S biogenesis. stabilizes exposed mRNA, possibly by protecting or destabilizing secondary structure of RNase E sites. Cold shock-inducible; acid-inducible.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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