arnB:Quickview: Difference between revisions

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{|   id="G49aee051e6c7b"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[arnB:Gene|''arnB]]'' (synonyms: ''yfbE, ECK2246, b2253, JW5372, pmrH'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''arnB''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[arnB:Gene_Product(s)|YfbE product]]<ref name='LIB:Riley_2006'/>: uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent product, B2253 product, PmrH product, ArnB product
''yfbE, ECK2246, b2253, JW5372, pmrH''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, pgbP1, pmrH''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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G7166-MONOMER<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
G7166<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


UDP-4-amino-4-deoxy-L-arabinose synthase; UDP-4"-ketopentose aminotransferase; L-glutamate is the amine donor<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent<ref name='LIB:Riley_2006'/>, B2253<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfbE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PmrH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ArnB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2246, JW5372, pgbP1, pmrH, yfbE, b2253''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:yfbE|yfbE]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:yfbE|yfbE]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=arnB&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7166]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003742&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=arnB&loc=MG1655%3A2363932..2365089,W3110%3A2370580..2371737,DH10B%3A2454938..2456077,BW2952%3A2249755..2250894]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2249755&end=2250894&gene=arnB&aa=mdrysmaegkamseflpfsrpamgveelaavkevlesgwittgpknqaleqafcqltgnqhaiavssatagmhitlmalkigkgdevitpsltwvstlnmisllgatpvmvdvdrdtlmvtpeaiesaitprtkaiipvhyagapadidairaigerygiaviedaahavgtyykgrhigakgtaifsfhaiknitcaegglivtdnenlarqlrmlkfhglgvdaydrqtwgrapqaevltpgykynltdinaaialtqlvklehlntrrreiaqqyqqalaalpfqplslpawphvhawhlfiirvdeqrcgisrdalmealkergigtglhfraahtqkyyrerfptlslpntewnsericslplfpdmttadadhvitalqqlagq]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=arnB+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=arnB]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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Involved in a lipid A modification required for polymyxin B and cationic antimicrobial peptide resistance. basRS regulon. AFMB Structural Genomics target No. 36 (http://afmb.cnrs-mrs.fr/article171.html). otherPDB (S. typhimurium): 1MDO, 1MDX, 1MDZ.<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:52, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

arnB

Gene Synonym(s)

yfbE, ECK2246, b2253, JW5372, pmrH[1][2], pgbP1, pmrH

Product Desc.

G7166[2][3]

UDP-4-amino-4-deoxy-L-arabinose synthase; UDP-4"-ketopentose aminotransferase; L-glutamate is the amine donor[4]

Product Synonyms(s)

uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent[1], B2253[2][1], YfbE[2][1], PmrH[2][1], ArnB[2][1] , ECK2246, JW5372, pgbP1, pmrH, yfbE, b2253

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yfbE[2]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


Involved in a lipid A modification required for polymyxin B and cationic antimicrobial peptide resistance. basRS regulon. AFMB Structural Genomics target No. 36 (http://afmb.cnrs-mrs.fr/article171.html). otherPDB (S. typhimurium): 1MDO, 1MDX, 1MDZ.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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