ubiF:Quickview: Difference between revisions

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{|   id="O49b027a1c22b9"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[ubiF:Gene|''ubiF]]'' (synonyms: ''ECK0654, b0662, JW0659, yleB, G211'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''ubiF''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[ubiF:Gene_Product(s)|UbiF product]]<ref name='LIB:Riley_2006'/>: 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol oxygenase product, B0662 product, YleB product
''ECK0654, b0662, JW0659, yleB, G211''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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OCTAPRENYL-METHYL-METHOXY-BENZOQ-OH-MON<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
OCTAPRENYL-METHYL-METHOXY-BENZOQ-OH-MON<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; produces 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol; required for ubiquinone synthesis; mutation confers resistance to bleomycin, phleomycin and heat<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol oxygenase<ref name='LIB:Riley_2006'/>, B0662<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YleB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, UbiF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0654, JW0659, yleB, b0662''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:ubiF|ubiF]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ubiF|ubiF]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ubiF&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6365]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120002972&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ubiF&loc=MG1655%3A694324..695499,W3110%3A695523..696698,DH10B%3A746916..748091,REL606%3A677196..678371,BW2952%3A597084..598259]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=597084&end=598259&gene=ubiF&aa=mtnqpteiaivgggmvggalalglaqhgfavtviehaepapfvadsqpdvrisaisaasvsllkglgvwdavqamrchpyrrletwewetahvvfdaaelklpllgymventvlqqalwqaleahpkvtlrvpgslialhrhddlqelelkggeviraklvigadgansqvrqmagigvhawqyaqscmlisvqcendpgdstwqqftpdgpraflplfdnwaslvwydsparirqlqnmnmaqlqaeiakhfpsrlgyvtplaagafpltrrhalqyvqpglalvgdaahtihplagqgvnlgyrdvdalidvlvnarsygeawasypvlkryqmrrmadnfimqsgmdlfyagfsnnlpplrfmrnlglmaaeragvlkrqalkyalgl]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ubiF+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ubiF]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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visC, ubiH, ubiF and mhpA are paralogs.<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:45, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

ubiF

Gene Synonym(s)

ECK0654, b0662, JW0659, yleB, G211[1][2]

Product Desc.

OCTAPRENYL-METHYL-METHOXY-BENZOQ-OH-MON[2][3]

2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; produces 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol; required for ubiquinone synthesis; mutation confers resistance to bleomycin, phleomycin and heat[4]

Product Synonyms(s)

2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol oxygenase[1], B0662[2][1], YleB[2][1], UbiF[2][1] , ECK0654, JW0659, yleB, b0662

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ubiF[2]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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visC, ubiH, ubiF and mhpA are paralogs.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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