yafO:Quickview: Difference between revisions

Latest revision as of 21:44, 27 May 2013

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Quickview

Gene

Standard Name	yafO
Gene Synonym(s)	ECK0234, b0233, JW0223^[1], JW0223
Product Desc.	conserved protein with a possible role in spontaneous mutagenesis; toxin of a putative toxin-antitoxin pair^[2]^[3] Possible toxin, function unknown^[4]
Product Synonyms(s)	predicted toxin of the YafO-YafN toxin-antitoxin system^[1], B0233^[2]^[1], YafO^[2]^[1] , ECK0234, JW0223, b0233
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): yafN^[2]
Regulation/Activity
Quick Links
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Notes

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LexA regulon. dinB-yafNOP operon. The phenotype of some dinB alleles to reduce spontaneous mutations may be due to polarity effects on yafO. Overexpression causes filamentous biofilm formation and increased CV staining. Overexpression also reported to inhibit growth (Brown, 2003). YafN may be antitoxin for possible toxin YafO.^[4]

References

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↑ ^1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

[LIB:Riley_2006-1] 1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)

[LIB:EcoCyc10.6-2] 2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoCyc11.1-3] EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoGene-4] 4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

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[2]

[3]

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 {{Tab On|Quickview|yafO}}{{Tab|Gene|yafO}}{{Tab|Gene Product(s)|yafO}}{{Tab|Expression|yafO}}{{Tab|Evolution|yafO}}{{Tab|On One Page|yafO}}{{TabsBottom}}
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+{|   id="Z49b02920498fa"  class=" tableEdit New_Quickview_Table"
 |-
-!{{table_heading_style}} |Gene Name
+!align=left {{table_heading_style}} |Standard Name
-|
+||
-[[yafO:Gene|''yafO]]'' (synonyms: ''ECK0234, b0233, JW0223'')<ref name='LIB:Riley_2006'/>
+''yafO''
 |-
-!{{table_heading_style}} |Product(s)
+!align=left {{table_heading_style}} |Gene Synonym(s)
-|
+||
-[[yafO:Gene_Product(s)|YafO product]]<ref name='LIB:Riley_2006'/>: predicted toxin of the YafO-YafN toxin-antitoxin system<ref name='LIB:Riley_2006'/>, B0233<ref name='LIB:EcoCyc10.6'/>, YafO<ref name='LIB:EcoCyc10.6'/>
+''ECK0234, b0233, JW0223''<ref name='LIB:Riley_2006'/>, JW0223''
 |-
-!{{table_heading_style}} |Description
+!align=left {{table_heading_style}} |Product Desc.
-|
+||
 conserved protein with a possible role in spontaneous mutagenesis;  toxin of a putative toxin-antitoxin pair<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
+Possible toxin, function unknown<ref name='LIB:EcoGene'/>
+|-
+!align=left {{table_heading_style}} |Product Synonyms(s)
+||
+''predicted toxin of the YafO-YafN toxin-antitoxin system<ref name='LIB:Riley_2006'/>, B0233<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YafO<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0234, JW0223, b0233''
+|-
+!align=left {{table_heading_style}} |Function from GO
+||
+<GO_nr />
 |-
-!{{table_heading_style}} |Knock-Out Phenotype
+!align=left {{table_heading_style}} |Knock-Out Phenotype
-|
+||
 |-
-!{{table_heading_style}} |Regulation/Expression
+!align=left {{table_heading_style}} |Regulation/Expression
-|
+||
-transcription unit(s): [[:Category:txn_units:yafN|yafN]]<ref name='LIB:EcoCyc10.6'/>
+transcription unit(s): [[:Category:Txn_unit:yafN|yafN]]<ref name='LIB:EcoCyc10.6'/>
 |-
-!{{table_heading_style}} |Regulation/Activity
+!align=left {{table_heading_style}} |Regulation/Activity
-|
+||
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+!align=left {{table_heading_style}} |Quick Links
+||
+[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yafO&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6117]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120002737&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yafO&loc=MG1655%3A252301..252699,W3110%3A252301..252699,DH10B%3A226405..226803,REL606%3A256864..257262,BW2952%3A252300..252698]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=252300&end=252698&gene=yafO&aa=mrvfktklirlqltaeeldaltadfisykrdgvlpdifgrdalyddsftwplikfervahihlanennpfppqlrqfsrtndeahlvycqgafdeqawlliailkpephklardnnqmhkigkmaeafrmrf]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yafO+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yafO]]&nbsp;&nbsp;
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 <protect><!--Quickview_notes--></protect>
-==Notes==
+===Notes===
+{{BacktoTop}}
+LexA regulon. dinB-yafNOP operon. The phenotype of some dinB alleles to reduce spontaneous mutations may be due to polarity effects on yafO.  Overexpression causes filamentous biofilm formation and increased CV staining.  Overexpression also reported to inhibit growth (Brown, 2003). YafN may be antitoxin for possible toxin YafO.<ref name='LIB:EcoGene'/>
 <noinclude>
 ==References==
+{{BacktoTop}}
 <references/>
 </noinclude>

yafO:Quickview: Difference between revisions

Latest revision as of 21:44, 27 May 2013

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