yfbT:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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From Inparanoid:20070104  
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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From Inparanoid:20070104  
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
From ECOO157CYC  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00702 PF00702  haloacid dehalogenase-like hydrolase]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00702 PFAM:PF00702]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=56784 SUPERFAMILY:56784]
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[[EcoCyc]]
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EcoCyc:G7187
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG14104
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120003762
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB3857
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0007567
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
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{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
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===Categories===
===Categories===
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Latest revision as of 08:34, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT4G21470 (score: 1.000; bootstrap: 78%)
  • AT4G25840 (score: 0.077)
  • AT5G57440 (score: 0.076)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00042333 (score: 1.000; bootstrap: 100%)
  • WBGene00023956 (score: 0.787)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00020113 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0031335 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q652P6 (score: 1.000; bootstrap: 59%)
  • Q7XTZ9 (score: 0.239)
  • Q9FUN1 (score: 0.236)
  • Q8S485 (score: 0.236)
  • Q60DU2 (score: 0.086)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YHR044C (score: 1.000; bootstrap: 91%)
  • YHR043C (score: 0.913)
  • YIL053W (score: 0.056)
  • YER062C (score: 0.051)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000040945 (score: 1.000; bootstrap: 71%)

From Inparanoid:20070104

Shigella flexneri

YFBT

From SHIGELLACYC

E. coli O157

YFBT

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00702 haloacid dehalogenase-like hydrolase

Superfamily (EcoliWiki Page)

SUPERFAMILY:56784

EcoCyc

EcoCyc:G7187

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG14104

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003762

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3857

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007567

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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