pheA:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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From Inparanoid:20070104  
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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From Inparanoid:20070104  
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
From ECOO157CYC  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF01817 PF01817  Chorismate mutase type II]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=48600 SUPERFAMILY:48600]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21022:SF0 PTHR21022:SF0]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01817 PFAM:PF01817]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=55021 SUPERFAMILY:55021]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00800 PF00800  Prephenate dehydratase]
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[[EcoCyc]]
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EcoCyc:EG10707
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10707
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000699
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0701
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0008545
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
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{{RefHelp}}
{{RefHelp}}
<references/>
<references />
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===Categories===
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Latest revision as of 08:34, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT3G07630 (score: 1.000; bootstrap: 100%)
  • AT1G11790 (score: 0.416)
  • AT1G08250 (score: 0.410)
  • AT2G27820 (score: 0.401)
  • AT5G22630 (score: 0.358)
  • AT3G44720 (score: 0.349)

From Inparanoid:20070104

Oryza gramene

  • Q6Z3Y3 (score: 1.000; bootstrap: 100%)
  • Q650W1 (score: 0.440)
  • Q650V6 (score: 0.438)
  • Q7XLY2 (score: 0.426)
  • Q8H0A1 (score: 0.152)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YNL316C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC30D106 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000018766 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

PHEA

From SHIGELLACYC

E. coli O157

PHEA

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01817 Chorismate mutase type II

Superfamily (EcoliWiki Page)

SUPERFAMILY:48600

Panther (EcoliWiki Page)

PTHR21022:SF0

Superfamily (EcoliWiki Page)

SUPERFAMILY:55021

Pfam (EcoliWiki Page)

PF00800 Prephenate dehydratase

EcoCyc

EcoCyc:EG10707

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10707

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000699

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0701

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008545

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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