ndh:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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''Gallus gallus''   
''Gallus gallus''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Oryza gramene''   
''Oryza gramene''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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''E. coli'' O157  
''E. coli'' O157  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00070 PF00070  Pyridine nucleotide-disulphide oxidoreductase]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00070 PF00070  Pyridine nucleotide-disulphide oxidoreductase]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=51905 SUPERFAMILY:51905]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00070 PFAM:PF00070]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=51905 SUPERFAMILY:51905]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22915:SF6 PTHR22915:SF6]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF07992 PF07992  Pyridine nucleotide-disulphide oxidoreductase]
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[[EcoCyc]]
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EcoCyc:EG10649
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10649
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000642
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0643
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0003746
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
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{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
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===Categories===
===Categories===
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Latest revision as of 08:31, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT2G29990 (score: 1.000; bootstrap: 60%)
  • AT1G07180 (score: 0.808)
  • AT4G05020 (score: 0.194)
  • AT4G28220 (score: 0.194)
  • AT2G20800 (score: 0.178)
  • AT4G21490 (score: 0.127)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00038111 (score: 1.000; bootstrap: 100%)
  • WBGene00038112 (score: 0.752)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000012973 (score: 1.000; bootstrap: 89%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0190805 (score: 1.000; bootstrap: 81%)
  • DDB0188774 (score: 0.232)
  • DDB0168392 (score: 0.195)
  • DDB0190809 (score: 0.171)
  • DDB0201952 (score: 0.126)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000007614 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000015274 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q5W745 (score: 1.000; bootstrap: 57%)
  • Q655G1 (score: 1.000; bootstrap: 59%)
  • Q6YZ09 (score: 0.332)
  • Q8H5X6 (score: 0.182)
  • Q5QLT6 (score: 0.112)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YDL085W (score: 1.000; bootstrap: 100%)
  • YMR145C (score: 0.550)
  • YML120C (score: 0.280)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC9475c (score: 1.000; bootstrap: 100%)
  • SPAC3A117 (score: 0.304)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000158126 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00025004001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

NDH

From SHIGELLACYC

E. coli O157

NDH

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00070 Pyridine nucleotide-disulphide oxidoreductase

Pfam (EcoliWiki Page)

PF00070 Pyridine nucleotide-disulphide oxidoreductase

Superfamily (EcoliWiki Page)

SUPERFAMILY:51905

Superfamily (EcoliWiki Page)

SUPERFAMILY:51905

Panther (EcoliWiki Page)

PTHR22915:SF6

Pfam (EcoliWiki Page)

PF07992 Pyridine nucleotide-disulphide oxidoreductase

EcoCyc

EcoCyc:EG10649

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10649

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000642

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0643

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003746

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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