aceE:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
Edited by wikibot
/Volumes/r3/t3/ul/phpwikibots/trunk/touch_all_tables.php
 
(11 intermediate revisions by 2 users not shown)
Line 25: Line 25:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->{{Evolution_homologs_table_help}}
{|class = 'sortable' {{Prettytable}} id='207138'
{|  id="D46ab9932850b3"  class=" tableEdit Evolution_homologs_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
|-
|-  
|
|
''Anopheles gambiae''   
''Anopheles gambiae''   
Line 39: Line 39:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Shigella flexneri''   
''Shigella flexneri''   
Line 46: Line 46:
|
|
From SHIGELLACYC  
From SHIGELLACYC  
|-
|-  
|
|
''E. coli'' O157  
''E. coli'' O157  
Line 53: Line 53:
|
|
From ECOO157CYC  
From ECOO157CYC  
|-class='sortbottom'
 
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.44213.D46ab9932850b3&page=44213&pagename={{FULLPAGENAMEE}} edit table] || ||
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.44213.D46ab9932850b3&page=44213&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.44213.D46ab9932850b3-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.44213.D46ab9932850b3-->
{{Evolution_homologs_table_help}}


===Do-It-Yourself Web Tools===
<protect><!--Families_notes--></protect>
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_414656&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
 
<protect><!--Homology_notes--></protect>
===Notes===
===Notes===


==Families==
==Families==
{{BacktoTop}}
{{BacktoTop}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.44213.D46ab9932850b3-->
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.44213.D4c604da2232ed-->
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->{{Evolution_families_table_help}}
{|class = 'sortable' {{Prettytable}} id='207138'
{|  id="D4c604da2232ed"  class=" tableEdit Evolution_families_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Database!!Accession!!Notes
|-
|-  
|
''Anopheles gambiae'' 
|
* ENSANGP00000025779 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
|
''Shigella flexneri'' 
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
ACEE
[http://pfam.janelia.org/family/PF00456 PF00456  Transketolase, thiamine diphosphate binding domain]
|
|
From SHIGELLACYC
|-
|-  
|
|
''E. coli'' O157
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
ACEE
[http://pfam.janelia.org/family/PF00456 PF00456  Transketolase, thiamine diphosphate binding domain]
|
|
From ECOO157CYC
|-class='sortbottom'
 
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.44213.D46ab9932850b3&page=44213&pagename={{FULLPAGENAMEE}} edit table] || ||
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.44213.D4c604da2232ed&page=44213&pagename={{FULLPAGENAMEE}}&type=0&template=Evolution_families_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.44213.D46ab9932850b3-->
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.44213.D4c604da2232ed--></protect>
{{Evolution_families_table_help}}
<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===


Line 116: Line 103:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|class = 'sortable' {{Prettytable}} id='107944'
{|   id="T46a7e94d91a2a"  class=" tableEdit Links_table" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Name!!URL!!Comments
!|Name!!URL!!Comments
|-class='sortbottom'
 
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.44213.T46a7e94d91a2a&page=44213&pagename={{FULLPAGENAMEE}} edit table] || ||
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.44213.T46a7e94d91a2a&page=44213&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.44213.T46a7e94d91a2a-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.44213.T46a7e94d91a2a-->
{{Links_help}}
 


==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 21:08, 15 August 2011

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000025779 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

ACEE

From SHIGELLACYC

E. coli O157

ACEE

From ECOO157CYC

edit table


Notes

Families

[back to top]


See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00456 Transketolase, thiamine diphosphate binding domain

Pfam (EcoliWiki Page)

PF00456 Transketolase, thiamine diphosphate binding domain


edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=aceE:Evolution&oldid=1283691"