pfkA:Evolution: Difference between revisions

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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="W46ac0f2a5d7b8"  class=" tableEdit Evolution_homologs_table" 
|- {{table heading style}}
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Apis mellifera''   
''Apis mellifera''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Bos taurus''   
''Bos taurus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Danio rerio''   
''Danio rerio''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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From Inparanoid:20070104  
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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From Inparanoid:20070104  
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
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''Pan troglodytes''   
''Pan troglodytes''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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From Inparanoid:20070104  
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''Takifugu rubripes''   
''Takifugu rubripes''   
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From Inparanoid:20070104  
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
From ECOO157CYC  
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|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.51801.W46ac0f2a5d7b8&page=51801&pagename={{FULLPAGENAMEE}} edit table] || ||
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_418351&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_418351&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="O46ac0f5d07230"  class=" tableEdit Gene_accessions_table" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53784 SUPERFAMILY:53784]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13697:SF0 PTHR13697:SF0]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00365 PFAM:PF00365]
[http://pfam.janelia.org/family/PF00365 PF00365 Phosphofructokinase]
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[[EcoCyc]]
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EcoCyc:EG10699
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10699
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[RegulonDB]]
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RegulonDB:ECK120000691
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0693
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[ASAP]]
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ASAP:ABE-0012789
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
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Latest revision as of 08:37, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000025715 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000012688 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G26270 (score: 1.000; bootstrap: 84%)
  • AT5G56630 (score: 0.868)
  • AT4G29220 (score: 0.747)
  • AT4G32840 (score: 0.707)
  • AT5G61580 (score: 0.655)
  • AT5G47810 (score: 0.416)
  • AT2G22480 (score: 0.340)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000003472 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000000358 (score: 0.670)
  • ENSBTAP00000014086 (score: 0.624)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00025167 (score: 1.000; bootstrap: 100%)
  • WBGene00038394 (score: 0.251)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00022199 (score: 1.000; bootstrap: 100%)
  • WBGene00008230 (score: 0.254)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000013277 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000016138 (score: 0.643)
  • ENSCAFP00000008221 (score: 0.625)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000009557 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040912-135 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040912-137 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0191364 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0003071 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA17840-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000011230 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000010557 (score: 0.543)
  • ENSGALP00000021650 (score: 0.207)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000263145 (score: 1.000; bootstrap: 100%)
  • ENSP00000352842 (score: 0.679)
  • ENSP00000309438 (score: 0.633)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000002741 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000006549 (score: 0.609)
  • ENSMMUP00000005583 (score: 0.460)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000008095 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000003803 (score: 0.411)

From Inparanoid:20070104

Mus musculus

  • MGI:97548 (score: 1.000; bootstrap: 100%)
  • MGI:97547 (score: 0.677)
  • MGI:1891833 (score: 0.664)

From Inparanoid:20070104

Oryza gramene

  • Q5JNC6 (score: 1.000; bootstrap: 86%)
  • Q65X97 (score: 1.000; bootstrap: 85%)
  • Q5SNH5 (score: 0.603)
  • Q6L4N6 (score: 0.582)
  • Q5VMJ5 (score: 0.571)
  • Q69QS5 (score: 0.350)
  • Q7FB09 (score: 0.281)
  • Q6EQ16 (score: 0.274)
  • Q6Z522 (score: 0.265)
  • Q948J0 (score: 0.225)
  • Q7XEV3 (score: 0.225)
  • Q7X9K2 (score: 0.078)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000042531 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000003790 (score: 0.671)
  • ENSPTRP00000039186 (score: 0.407)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000013374 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000001625 (score: 0.679)
  • ENSRNOP00000023252 (score: 0.651)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YGR240C (score: 1.000; bootstrap: 100%)
  • YMR205C (score: 0.376)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC16H52 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000173592 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000162597 (score: 0.838)
  • NEWSINFRUP00000181382 (score: 0.581)
  • NEWSINFRUP00000145340 (score: 0.543)
  • NEWSINFRUP00000178137 (score: 0.292)
  • NEWSINFRUP00000130965 (score: 0.064)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00015248001 (score: 1.000; bootstrap: 83%)
  • GSTENP00016608001 (score: 0.573)
  • GSTENP00028145001 (score: 0.417)
  • GSTENP00030519001 (score: 0.290)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000015829 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000047469 (score: 0.626)

From Inparanoid:20070104

Shigella flexneri

PFKA

From SHIGELLACYC

E. coli O157

PFKA

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:53784

Panther (EcoliWiki Page)

PTHR13697:SF0

Pfam (EcoliWiki Page)

PF00365 Phosphofructokinase

EcoCyc

EcoCyc:EG10699

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10699

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000691

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0693

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012789

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

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