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{{Pagetop}}
[[Category:Databases]][[Category:Animal Databases]][[Category:MODs]]
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'''WormBase'''
'''You can help [[EcoliWiki]] by editing the content of this page.  For information about obtaining editing privileges, see [[E._coli_Wiki:Membership]]''' 
[[Category:Databases]]
{|{{Prettytable}} width='30%' align = 'right'
|- align='center' bgcolor = '#ddddff'
|  colspan = '2' | '''{{PAGENAME}}'''
|-
|-
| width='30%' | Who:
!align=left {{table heading style}} |Link/URL:
| ''proprietor''
||
http://wormbase.org/
|-
|-
| width='30%' | What:
!align=left {{table heading style}} |What:
| ''short description''
||
C. elegans genome information
|-
|-
| Where:
!align=left {{table heading style}} |Who:
| [http://www.wormbase.org {{PAGENAME}}]
||
 
|-
|-
| Updates
!align=left {{table heading style}} |Updates:
|
||
 
|-
|-
| Upcoming events
!align=left {{table heading style}} |Upcoming events:
| ''link to event calendar, if applicable''
||
 
|-
|-
| Web Services
!align=left {{table heading style}} |Web Services:
|
||
RSS feeds:
* [http://www.wormbase.org/rss/wormbase-live.xml WormBase-live]
* [http://www.wormbase.org/rss/wormbase-dev.xml WormBase-dev]
* [http://www.wormbase.org/rss/wormmart.xml WormMart]
 
 
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=About {{PAGENAME}}=
<!--box uid=63ce1649aab8b3180235b0af7618f667.1752.S4a249e55a65f4--></protect>
''Add general information here''  
 
[http://www.wormbase.org {{PAGENAME}}] is...
 
=Content=
==About {{PAGENAME}}==
=Using {{PAGENAME}}=
Wormbase provides information about the genetics, genomics and biology of C. elegans and some related nematodes.
==Browsing==
 
==Searching==
==Content==
==Usage examples==
 
Sequences
:*''C. elegans'' genome
:*''C. briggsae'' genome
:*Gene Ontology
:*BLAST/ BLAT
:*e-PCR
:*Synteny Viewer
:* Cis Elements (Cis-ortho)
 
Cells and Gene Expression
:*Cell and Pedigree
:*Neurons
:*Expressoin Pattern
:*Expression Profile
 
Genetic Strans and Phenotypes
:*Genetic Interval
:*Rearrangements
:*Clone
:*Alleles
:*SNPs
:*Markers
:*Strains and Strain Reports
:* RNAi
 
 
Downloads and Data Mning
 
==Using {{PAGENAME}}==
====Browsing====
====Searching====
 
Right when you get to the home page, you may search by:
:*any gene
:*author
:*allele
:*cell
:*clone
:*database model
:*GO term
:*gene class
:*genetic map
:*Genbank accession number
:*literature search
:*microarray expression experiment
:*operon
:*primer pair
:*any protein
:*protein family or motif
:*RNAi experiment
:*any sequence
:*strains
:*Y2H interaction
 
====Usage examples====
''Add links to additional pages describing success stories here.''
''Add links to additional pages describing success stories here.''


=Other sites with related content=
==Other sites with related content==
=Technology=
==Technology==
==Web Services/API==
====Web Services/API====
=Discussion=
==Discussion==
==Trackbacks==
 
[[Trackbacks|''What are trackbacks?'']] ''This feature is not yet functional''
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
'''WormBase: better software, richer content'''
Erich M. Schwarz1, ''et al'' (2006).
Nucleic Acis Research 34:D475-D478
 
'''WormBase: a comprehensive data resource for Caenorhabditis biology and genomics'''
Nansheng Chen, ''et al''  (2005).
Nucleic Acids Research 33:D383-D389
 
'''WormBase: a multi-species resource for nematode biology and genomics'''
Todd W. Harris, ''et al'' (2004).
Nucleic Acids Research 32:D411-D417 
 
'''WormBase: a cross-species database for comparative genomics'''
Todd W. Harris, ''et al'' (2003).
Nucleic Acids Research 31:133-137


=References=
'''WormBase: network access to the genome and biology of ''Caenorhabditis elegans'''''
=External Links=
Lincoln D. Stein, Paul Sternberg, Richard Durbin, Jean Thierry-Mieg, and John Spieth (2001).
[http://www.wormbase.org {{PAGENAME}}]
Nucleic Acids Research 29:82-86
==Discussion of {{PAGENAME}} on other websites==
==External Links==
[http://www.wormbase.org {{PAGENAME}}] URL: http://www.wormbase.org
====Discussion of {{PAGENAME}} on other websites====

Latest revision as of 00:12, 23 May 2010

You can help EcoliWiki by editing the content of this page. For information about becoming a registered user and obtaining editing privileges, see Help:Accounts.

Link/URL:

http://wormbase.org/

What:

C. elegans genome information

Who:
Updates:
Upcoming events:
Web Services:

RSS feeds:


edit table


About WormBase

Wormbase provides information about the genetics, genomics and biology of C. elegans and some related nematodes.

Content

Sequences

  • C. elegans genome
  • C. briggsae genome
  • Gene Ontology
  • BLAST/ BLAT
  • e-PCR
  • Synteny Viewer
  • Cis Elements (Cis-ortho)

Cells and Gene Expression

  • Cell and Pedigree
  • Neurons
  • Expressoin Pattern
  • Expression Profile

Genetic Strans and Phenotypes

  • Genetic Interval
  • Rearrangements
  • Clone
  • Alleles
  • SNPs
  • Markers
  • Strains and Strain Reports
  • RNAi


Downloads and Data Mning

Using WormBase

Browsing

Searching

Right when you get to the home page, you may search by:

  • any gene
  • author
  • allele
  • cell
  • clone
  • database model
  • GO term
  • gene class
  • genetic map
  • Genbank accession number
  • literature search
  • microarray expression experiment
  • operon
  • primer pair
  • any protein
  • protein family or motif
  • RNAi experiment
  • any sequence
  • strains
  • Y2H interaction

Usage examples

Add links to additional pages describing success stories here.

Other sites with related content

Technology

Web Services/API

Discussion

References

[back to top]


See Help:References for how to manage references in EcoliWiki.

WormBase: better software, richer content Erich M. Schwarz1, et al (2006). Nucleic Acis Research 34:D475-D478

WormBase: a comprehensive data resource for Caenorhabditis biology and genomics Nansheng Chen, et al (2005). Nucleic Acids Research 33:D383-D389

WormBase: a multi-species resource for nematode biology and genomics Todd W. Harris, et al (2004). Nucleic Acids Research 32:D411-D417

WormBase: a cross-species database for comparative genomics Todd W. Harris, et al (2003). Nucleic Acids Research 31:133-137

WormBase: network access to the genome and biology of Caenorhabditis elegans Lincoln D. Stein, Paul Sternberg, Richard Durbin, Jean Thierry-Mieg, and John Spieth (2001). Nucleic Acids Research 29:82-86

External Links

WormBase URL: http://www.wormbase.org

Discussion of WormBase on other websites

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