glgC:Evolution: Difference between revisions

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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Q46ac0137d349c"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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From Inparanoid:20070104  
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
From SHIGELLACYC  
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
From ECOO157CYC  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417888&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417888&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00483 PF00483  Nucleotidyl transferase]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=51161 SUPERFAMILY:51161]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00483 PFAM:PF00483]
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22572:SF10 PTHR22572:SF10]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53448 SUPERFAMILY:53448]
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[[EcoCyc]]
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EcoCyc:EG10379
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10379
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000372
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0374
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0011204
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
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{{BacktoTop}}

Latest revision as of 08:36, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000003742 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000003549 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G48300 (score: 1.000; bootstrap: 100%)
  • AT5G19220 (score: 0.352)
  • AT1G27680 (score: 0.343)
  • AT2G21590 (score: 0.299)
  • AT4G39210 (score: 0.290)
  • AT1G05610 (score: 0.212)

From Inparanoid:20070104

Oryza gramene

  • Q7EZW3 (score: 1.000; bootstrap: 99%)
  • P55238 (score: 0.861)
  • Q4L1B1 (score: 0.858)
  • Q947B9 (score: 0.852)
  • Q84QT8 (score: 0.810)
  • P15280 (score: 0.793)
  • Q69T99 (score: 0.793)
  • Q9ARH9 (score: 0.789)
  • Q8HS72 (score: 0.783)
  • Q9M4Z1 (score: 0.780)
  • Q941P2 (score: 0.780)
  • P30523 (score: 0.774)
  • Q4L1B2 (score: 0.774)
  • Q5XXD1 (score: 0.769)
  • Q947C0 (score: 0.762)
  • Q84JD3 (score: 0.685)
  • Q84J79 (score: 0.685)
  • Q84PF3 (score: 0.684)
  • Q84J86 (score: 0.684)
  • Q84PF5 (score: 0.675)
  • Q84PF4 (score: 0.674)
  • Q6AVT2 (score: 0.367)
  • O04896 (score: 0.354)
  • Q8GRM4 (score: 0.307)
  • Q7G065 (score: 0.265)
  • Q5VNT5 (score: 0.265)
  • P93430 (score: 0.265)
  • P12299 (score: 0.263)
  • P30524 (score: 0.263)
  • Q9ARI0 (score: 0.260)
  • Q688T8 (score: 0.259)
  • O23809 (score: 0.259)
  • Q7XJA9 (score: 0.254)
  • Q9XHV4 (score: 0.253)
  • P55241 (score: 0.247)
  • O48877 (score: 0.244)
  • P12300 (score: 0.238)
  • P55234 (score: 0.216)
  • O24224 (score: 0.196)
  • Q7X9S8 (score: 0.167)
  • Q4U131 (score: 0.121)
  • Q4U128 (score: 0.121)
  • Q4U168 (score: 0.120)
  • Q4U129 (score: 0.119)
  • Q4U162 (score: 0.118)
  • Q4U133 (score: 0.118)
  • Q4U179 (score: 0.116)
  • Q4U156 (score: 0.116)
  • Q4U140 (score: 0.116)
  • Q4U138 (score: 0.116)
  • Q4U137 (score: 0.116)
  • Q4U135 (score: 0.116)
  • P12298 (score: 0.115)
  • Q84JA5 (score: 0.109)
  • Q84P33 (score: 0.106)
  • Q84P35 (score: 0.105)
  • Q84P32 (score: 0.105)
  • Q84P34 (score: 0.097)
  • Q4U130 (score: 0.082)
  • O22593 (score: 0.064)

From Inparanoid:20070104

Shigella flexneri

GLGC

From SHIGELLACYC

E. coli O157

GLGC

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00483 Nucleotidyl transferase

Superfamily (EcoliWiki Page)

SUPERFAMILY:51161

Panther (EcoliWiki Page)

PTHR22572:SF10

Superfamily (EcoliWiki Page)

SUPERFAMILY:53448

EcoCyc

EcoCyc:EG10379

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10379

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000372

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0374

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011204

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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