hyuA:Evolution: Difference between revisions

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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="R46abeb3a46dd0"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Bos taurus''   
''Bos taurus''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Danio rerio''   
''Danio rerio''   
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''E. coli'' O157  
''E. coli'' O157  
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{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417349&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417349&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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|- {{table_heading_style}}
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF01979 PF01979  Amidohydrolase family]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF01979 PF01979  Amidohydrolase family]
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|-
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=51338 SUPERFAMILY:51338]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01979 PFAM:PF01979]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=51556 SUPERFAMILY:51556]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11647:SF44 PTHR11647:SF44]
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[[EcoCyc]]
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EcoCyc:G7492
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG13056
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120004055
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB2868
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[ASAP]]
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ASAP:ABE-0009436
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
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Latest revision as of 08:35, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000003198 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000025590 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G12200 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000029176 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000014091 (score: 0.419)
  • ENSBTAP00000024720 (score: 0.408)
  • ENSBTAP00000024448 (score: 0.360)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00040591 (score: 1.000; bootstrap: 99%)
  • WBGene00026309 (score: 0.623)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00000963 (score: 1.000; bootstrap: 100%)
  • WBGene00000964 (score: 0.645)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000000958 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000023262 (score: 0.441)
  • ENSCAFP00000012901 (score: 0.437)
  • ENSCAFP00000009892 (score: 0.430)
  • ENSCAFP00000016338 (score: 0.401)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000001663 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050720-2 (score: 1.000; bootstrap: 100%)
  • ZDB-GENE-031105-1 (score: 0.669)
  • ZDB-GENE-050720-1 (score: 0.607)
  • ZDB-GENE-050720-3 (score: 0.487)
  • ZDB-GENE-030131-3136 (score: 0.321)
  • ZDB-GENE-050720-4 (score: 0.320)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0191172 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0023023 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA12765-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000025858 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000030864 (score: 0.440)
  • ENSGALP00000012246 (score: 0.430)
  • ENSGALP00000024212 (score: 0.423)
  • ENSGALP00000032328 (score: 0.374)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000276651 (score: 1.000; bootstrap: 100%)
  • ENSP00000309539 (score: 0.448)
  • ENSP00000343690 (score: 0.441)
  • ENSP00000342995 (score: 0.436)
  • ENSP00000288699 (score: 0.411)
  • ENSP00000339850 (score: 0.406)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000014094 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000025706 (score: 0.435)
  • ENSMMUP00000025935 (score: 0.415)
  • ENSMMUP00000029435 (score: 0.400)
  • ENSMMUP00000016692 (score: 0.354)
  • ENSMMUP00000025346 (score: 0.204)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000006711 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000012522 (score: 0.448)
  • ENSMODP00000002154 (score: 0.445)
  • ENSMODP00000019661 (score: 0.418)
  • ENSMODP00000020822 (score: 0.387)
  • ENSMODP00000021184 (score: 0.121)

From Inparanoid:20070104

Mus musculus

  • MGI:1928679 (score: 1.000; bootstrap: 100%)
  • MGI:1349762 (score: 0.433)
  • MGI:1349763 (score: 0.430)
  • MGI:107793 (score: 0.421)
  • MGI:1349764 (score: 0.394)
  • MGI:1929772 (score: 0.394)

From Inparanoid:20070104

Oryza gramene

  • Q5VR53 (score: 1.000; bootstrap: 100%)
  • Q94J90 (score: 0.981)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000029707 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000034408 (score: 0.688)
  • ENSPTRP00000005402 (score: 0.655)
  • ENSPTRP00000020178 (score: 0.342)
  • ENSPTRP00000035055 (score: 0.313)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000006004 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000012996 (score: 0.444)
  • ENSRNOP00000025880 (score: 0.439)
  • ENSRNOP00000041593 (score: 0.430)
  • ENSRNOP00000029334 (score: 0.409)
  • ENSRNOP00000012274 (score: 0.402)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000130744 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000136567 (score: 0.442)
  • NEWSINFRUP00000153961 (score: 0.415)
  • NEWSINFRUP00000149349 (score: 0.414)
  • NEWSINFRUP00000142327 (score: 0.414)
  • NEWSINFRUP00000143556 (score: 0.414)
  • NEWSINFRUP00000140077 (score: 0.393)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00015639001 (score: 1.000; bootstrap: 99%)
  • GSTENP00007032001 (score: 0.411)
  • GSTENP00035427001 (score: 0.391)
  • GSTENP00035726001 (score: 0.380)
  • GSTENP00033035001 (score: 0.340)
  • GSTENP00035429001 (score: 0.101)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000009450 (score: 1.000; bootstrap: 99%)
  • ENSXETP00000008801 (score: 0.253)
  • ENSXETP00000050910 (score: 0.189)
  • ENSXETP00000002654 (score: 0.182)

From Inparanoid:20070104

E. coli O157

Z4212

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01979 Amidohydrolase family

Pfam (EcoliWiki Page)

PF01979 Amidohydrolase family

Superfamily (EcoliWiki Page)

SUPERFAMILY:51338

Superfamily (EcoliWiki Page)

SUPERFAMILY:51556

Panther (EcoliWiki Page)

PTHR11647:SF44

EcoCyc

EcoCyc:G7492

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13056

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004055

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2868

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009436

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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