abgB:Evolution: Difference between revisions

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{|class = 'sortable' {{Prettytable}} id='209213'
{|  id="I46abbd22b1b29"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
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''Bos taurus''   
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''Gallus gallus''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
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''E. coli'' O157  
''E. coli'' O157  
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{{Evolution_homologs_table_help}}


===Do-It-Yourself Web Tools===
<protect><!--Families_notes--></protect>
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_415853&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
 
<protect><!--Homology_notes--></protect>
===Notes===
===Notes===


==Families==
==Families==
{{BacktoTop}}
{{BacktoTop}}
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****************************************************************************************** -->{{Evolution_families_table_help}}
{|class = 'sortable' {{Prettytable}} id='209213'
{|  id="W4c604d9d7e8ff"  class=" tableEdit Evolution_families_table" 
|- {{table heading style}}
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!Organism!!Homologs (Statistics)!!Comments
!|Database!!Accession!!Notes
|-
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''Bos taurus'' 
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* ENSBTAP00000015493 (score: 1.000; bootstrap: 100%)  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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From Inparanoid:20070104
[http://pfam.janelia.org/family/PF01546 PF01546  Peptidase family M20/M25/M40]
|-
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''Canis familiaris''  
   
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* ENSCAFP00000004605 (score: 1.000; bootstrap: 100%)
|- class="tableEdit_footer"
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|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.46653.W4c604d9d7e8ff&page=46653&pagename={{FULLPAGENAMEE}}&type=0&template=Evolution_families_table edit table]</span> || ||
From Inparanoid:20070104
|-
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''Gallus gallus'' 
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* ENSGALP00000025400 (score: 1.000; bootstrap: 100%)
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From Inparanoid:20070104
|-
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''Homo sapiens'' 
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* ENSP00000275072 (score: 1.000; bootstrap: 100%)
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From Inparanoid:20070104
|-
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''Macaca mulatta'' 
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* ENSMMUP00000019599 (score: 1.000; bootstrap: 100%)
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From Inparanoid:20070104
|-
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''Monodelphis domestica'' 
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* ENSMODP00000022796 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
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''Mus musculus'' 
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* MGI:2685270 (score: 1.000; bootstrap: 100%)
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From Inparanoid:20070104
|-
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''Pan troglodytes'' 
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* ENSPTRP00000031460 (score: 1.000; bootstrap: 100%)
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From Inparanoid:20070104
|-
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''Rattus norvegicus'' 
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* ENSRNOP00000010225 (score: 1.000; bootstrap: 100%)
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From Inparanoid:20070104
|-
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''Takifugu rubripes'' 
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* NEWSINFRUP00000157185 (score: 1.000; bootstrap: 100%)
* NEWSINFRUP00000134016 (score: 0.492)
|
From Inparanoid:20070104
|-
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''Tetraodon nigroviridis'' 
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* GSTENP00032133001 (score: 1.000; bootstrap: 100%)
* GSTENP00035518001 (score: 0.535)
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From Inparanoid:20070104
|-
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''Xenopus tropicalis'' 
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* ENSXETP00000019517 (score: 1.000; bootstrap: 100%)
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From Inparanoid:20070104
|-
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''E. coli'' O157
|
Z2427
|
From ECOO157CYC
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<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===


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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
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{{BacktoTop}}

Latest revision as of 20:59, 15 August 2011

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Bos taurus

  • ENSBTAP00000015493 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000004605 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000025400 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000275072 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000019599 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000022796 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:2685270 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000031460 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000010225 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000157185 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000134016 (score: 0.492)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00032133001 (score: 1.000; bootstrap: 100%)
  • GSTENP00035518001 (score: 0.535)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000019517 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

E. coli O157

Z2427

From ECOO157CYC

edit table


Notes

Families

[back to top]


See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01546 Peptidase family M20/M25/M40


edit table


Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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