hcr:Evolution: Difference between revisions

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Evolution

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism	Homologs (Statistics)	Comments
Anopheles gambiae	ENSANGP00000008218 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Apis mellifera	ENSAPMP00000021338 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Arabidopsis thaliana	AT2G27510 (score: 1.000; bootstrap: 52%) AT1G10960 (score: 1.000; bootstrap: 52%) AT1G60950 (score: 0.866) AT5G10000 (score: 0.316) AT4G14890 (score: 0.094) AT1G32550 (score: 0.082)	From Inparanoid:20070104
Bos taurus	ENSBTAP00000021956 (score: 1.000; bootstrap: 100%) ENSBTAP00000026548 (score: 0.594) ENSBTAP00000021485 (score: 0.525)	From Inparanoid:20070104
Caenorhabditis elegans	WBGene00020267 (score: 1.000; bootstrap: 54%) WBGene00020268 (score: 0.745)	From Inparanoid:20070104
Canis familiaris	ENSCAFP00000004410 (score: 1.000; bootstrap: 100%) ENSCAFP00000015233 (score: 0.063) ENSCAFP00000010109 (score: 0.055) ENSCAFP00000001359 (score: 0.051)	From Inparanoid:20070104
Danio rerio	ZDB-GENE-030131-8497 (score: 1.000; bootstrap: 100%) ZDB-CDNA-040425-235 (score: 1.000; bootstrap: 100%) ZDB-CDNA-040425-3197 (score: 0.651) ZDB-GENE-030131-3281 (score: 0.651) ZDB-CDNA-050522-225 (score: 0.066) ZDB-GENE-050522-225 (score: 0.066)	From Inparanoid:20070104
Drosophila melanogaster	FBgn0036211 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Drosophila pseudoobscura	GA10870-PA (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Gallus gallus	ENSGALP00000008475 (score: 1.000; bootstrap: 100%) ENSGALP00000022816 (score: 0.581) ENSGALP00000025496 (score: 0.092)	From Inparanoid:20070104
Homo sapiens	ENSP00000338461 (score: 1.000; bootstrap: 100%) ENSP00000290512 (score: 0.563) ENSP00000299498 (score: 0.519) ENSP00000265287 (score: 0.086)	From Inparanoid:20070104
Macaca mulatta	ENSMMUP00000013336 (score: 1.000; bootstrap: 100%) ENSMMUP00000009243 (score: 0.571) ENSMMUP00000025974 (score: 0.528) ENSMMUP00000012531 (score: 0.085)	From Inparanoid:20070104
Monodelphis domestica	ENSMODP00000001066 (score: 1.000; bootstrap: 100%) ENSMODP00000007465 (score: 0.588) ENSMODP00000023845 (score: 0.371) ENSMODP00000022903 (score: 0.077)	From Inparanoid:20070104
Oryza gramene	P11051 (score: 1.000; bootstrap: 100%) Q6ZJN6 (score: 1.000; bootstrap: 100%) Q40722 (score: 1.000; bootstrap: 100%) Q40684 (score: 0.924) O22382 (score: 0.895) Q8S3J5 (score: 0.840) P94044 (score: 0.824) Q75LK5 (score: 0.697) P27788 (score: 0.689) P00228 (score: 0.665) Q5N7C3 (score: 0.664) P27787 (score: 0.603) P27789 (score: 0.598) O80429 (score: 0.579) P83522 (score: 0.526) Q7XVG7 (score: 0.496) Q9AUK8 (score: 0.118) Q850T5 (score: 0.084) Q6JAD2 (score: 0.076)	From Inparanoid:20070104
Pan troglodytes	ENSPTRP00000003119 (score: 1.000; bootstrap: 100%) ENSPTRP00000024911 (score: 0.635) ENSPTRP00000005800 (score: 0.589) ENSPTRP00000031416 (score: 0.088)	From Inparanoid:20070104
Rattus norvegicus	ENSRNOP00000005485 (score: 1.000; bootstrap: 100%) ENSRNOP00000012878 (score: 0.569) ENSRNOP00000026744 (score: 0.504) ENSRNOP00000039062 (score: 0.097)	From Inparanoid:20070104
Saccharomyces cerevisiae	YML125C (score: 1.000; bootstrap: 100%) YML087C (score: 0.425) YIL043C (score: 0.207) YKL150W (score: 0.138)	From Inparanoid:20070104
Takifugu rubripes	NEWSINFRUP00000174874 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Tetraodon nigroviridis	GSTENP00023783001 (score: 1.000; bootstrap: 100%) GSTENP00004448001 (score: 0.065)	From Inparanoid:20070104
Shigella flexneri	S0868	From SHIGELLACYC
E. coli O157	Z1106	From ECOO157CYC
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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
Pfam (EcoliWiki Page)	PF00175 Oxidoreductase NAD-binding domain
Pfam (EcoliWiki Page)	PF00111 2Fe-2S iron-sulfur cluster binding domain
Pfam (EcoliWiki Page)	PF00970 Oxidoreductase FAD-binding domain
Superfamily (EcoliWiki Page)	SUPERFAMILY:52343
Panther (EcoliWiki Page)	PTHR19370:SF35
Superfamily (EcoliWiki Page)	SUPERFAMILY:54292
Superfamily (EcoliWiki Page)	SUPERFAMILY:63380
EcoCyc	EcoCyc:G6456	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG13691	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120003056	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB3455	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0002960	Escherichia coli str. K-12 substr. MG1655
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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

hcr:Evolution: Difference between revisions

Latest revision as of 08:31, 27 May 2013

Homologs in Other Organisms

Do-It-Yourself Web Tools

Notes

Families

Notes

Links

References

Categories

Navigation menu

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+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="B46abb0ccbc68b"  class=" tableEdit Evolution_homologs_table"
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+|- class="tableEdit_footer"
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 ===Do-It-Yourself Web Tools===
 *[http://130.14.29.110/BLAST/ BLAST]
 *[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
-*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_415393&idtype=all&start=on&species=All&conf=0.05 InParanoid]
+*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_415393&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
 *[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
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+[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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+[http://pfam.janelia.org/family/PF00175 PF00175  Oxidoreductase NAD-binding domain ]
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+|-
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+[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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+[http://pfam.janelia.org/family/PF00111 PF00111  2Fe-2S iron-sulfur cluster binding domain]
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+|-
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+[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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+[http://pfam.janelia.org/family/PF00970 PF00970  Oxidoreductase FAD-binding domain]
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+|-
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+[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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+[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52343 SUPERFAMILY:52343]
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+|-
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+[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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+[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19370:SF35 PTHR19370:SF35]
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-[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])
+|-
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-[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00970 PFAM:PF00970]
+[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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+[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=54292 SUPERFAMILY:54292]
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+[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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+[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=63380 SUPERFAMILY:63380]
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+|-
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+[[EcoCyc]]
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+EcoCyc:G6456
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+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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+[[EcoGene]]
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+EcoGene:EG13691
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+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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+[[RegulonDB]]
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+RegulonDB:ECK120003056
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+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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+[[EchoBASE]]
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+EchoBASE:EB3455
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+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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+[[ASAP]]
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+ASAP:ABE-0002960
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 ==References==
 {{BacktoTop}}
 {{RefHelp}}
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+<references />
-<noinclude>
 __NOTOC__
-</noinclude>
 ===Categories===
 {{BacktoTop}}

hcr:Evolution: Difference between revisions

Latest revision as of 08:31, 27 May 2013

Homologs in Other Organisms

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Families

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