Membrane Protein Data Bank (MPDB): Difference between revisions

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[[Category:Databases]]
[[Category:Databases]]
{|{{Prettytable}} width='30%' align = 'right'
[[Category:Protein Databases]]
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[[Category:Structure Databases]]
|  colspan = '2' | '''{{PAGENAME}}'''
 
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{| {{Prettytable}} width='30%' align="right"  id="L4a25ae6371c5c"  class=" tableEdit Database_table" 
 
|-
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| width='30%' | Who:
!align=left {{table heading style}} |Link/URL:
| ''proprietor''
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[http://www.mpdb.ul.ie/ Membrane Protein Data Bank (MPDB)]
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| width='30%' | What:
!align=left {{table heading style}} |What:
| ''short description''
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A database for membrane proteins
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| Where:
!align=left {{table heading style}} |Who:
| [http://{{{1|link}}} {{PAGENAME}}]
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Martin Caffrey
|-
|-
| Updates
!align=left {{table heading style}} |Updates:
|
||
 
|-
|-
| Upcoming events
!align=left {{table heading style}} |Upcoming events:
| ''link to event calendar, if applicable''
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|-
|-
| Web Services
!align=left {{table heading style}} |Web Services:
|
||
 
 
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=About {{PAGENAME}}=
=About {{PAGENAME}}=
''Add general information here''
The [http://www.mpdb.ul.ie/ Membrane Protein Data Bank or MPDB] is a publicly available database that contains structural information on integral, peripheral and anchored membrane proteins as well as peptides.  The data included comes from the [http://www.rcsb.org/pdb/Welcome.do Protein Database], as well as literature and other databases.
[http://{{{1|link}}} {{PAGENAME}}] is...
 
=Content=
=Content=
The MPDB contains structural information relating to membrane proteins and peptides. The structures in the database are based on X-ray and electron diffraction, nuclear magnetic resonance and cryo-electron microscopy.
=Using {{PAGENAME}}=
=Using {{PAGENAME}}=
==Browsing==
==Browsing==
==Searching==
==Searching==
The MPDB provides better searching then the PDB. Searching in the MPDB allowed for more flexibility and discriminiating query.  Under the main [http://www.lipidat.chemistry.ohio-state.edu/MPDB/SearchStart.htm search]page, there are some standard searches.  Due to its limited size, the curators of the database have implemented pull-down menu for searching by author.  Additionally, there is a pull-down menu for co-crystalants, crystallization method, position in membrane, technique, expression system, family, function, jouranl, name and other conditions. 
For a more customized search, the user can select [http://www.lipidat.chemistry.ohio-state.edu/MPDB/customseach.asp Customized Search] from the main [http://www.lipidat.chemistry.ohio-state.edu/MPDB/SearchStart.htm Search] area.
==Usage examples==
==Usage examples==
''Add links to additional pages describing success stories here.''
 
Other people have used the MPDB as shown in the following citations:<BR>


=Other sites with related content=
=Other sites with related content=
[http://pdbtm.enzim.hu/ Protein Databank of Transmembrane Proteins]<BR>
[http://www.rcsb.org Protein Databank]
=Technology=
=Technology=
==Web Services/API==
==Web Services/API==
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=References=
=References=
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<references />
Raman, P., Cherezov, V., Caffrey, M. 2006. The Membrane Protein Data Bank. Cell Mol. Life Sci. 63: 36-51 [http://www.springerlink.com/media/03x1mb08qr2xxvaedad3/contributions/7/q/8/m/7q8m567l3746663h.pdf PDF]
=External Links=
=External Links=
[http://{{{1|www.lipidat.chemistry.ohio-state.edu/MPDB/index.asp}}} {{PAGENAME}}]
[http://{{{1|www.lipidat.chemistry.ohio-state.edu/MPDB/index.asp}}} {{PAGENAME}}]
==Discussion of {{PAGENAME}} on other websites==
==Discussion of {{PAGENAME}} on other websites==

Latest revision as of 00:11, 23 May 2010

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Link/URL:

Membrane Protein Data Bank (MPDB)

What:

A database for membrane proteins

Who:

Martin Caffrey

Updates:
Upcoming events:
Web Services:


edit table


About Membrane Protein Data Bank (MPDB)

The Membrane Protein Data Bank or MPDB is a publicly available database that contains structural information on integral, peripheral and anchored membrane proteins as well as peptides. The data included comes from the Protein Database, as well as literature and other databases.

Content

The MPDB contains structural information relating to membrane proteins and peptides. The structures in the database are based on X-ray and electron diffraction, nuclear magnetic resonance and cryo-electron microscopy.

Using Membrane Protein Data Bank (MPDB)

Browsing

Searching

The MPDB provides better searching then the PDB. Searching in the MPDB allowed for more flexibility and discriminiating query. Under the main searchpage, there are some standard searches. Due to its limited size, the curators of the database have implemented pull-down menu for searching by author. Additionally, there is a pull-down menu for co-crystalants, crystallization method, position in membrane, technique, expression system, family, function, jouranl, name and other conditions.


For a more customized search, the user can select Customized Search from the main Search area.

Usage examples

Other people have used the MPDB as shown in the following citations:

Other sites with related content

Protein Databank of Transmembrane Proteins
Protein Databank

Technology

Web Services/API

Discussion

References

[back to top]


See Help:References for how to manage references in EcoliWiki.

Raman, P., Cherezov, V., Caffrey, M. 2006. The Membrane Protein Data Bank. Cell Mol. Life Sci. 63: 36-51 PDF

External Links

Membrane Protein Data Bank (MPDB)

Discussion of Membrane Protein Data Bank (MPDB) on other websites

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