nikE:Quickview: Difference between revisions

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{|   id="W49aeee1d33811"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[nikE:Gene|''nikE]]'' (synonyms: ''ECK3464, b3480, JW3445, hydD, hydC'')<ref name='LIB:Riley_2006'/>
''nikE''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[nikE:Gene_Product(s)|NikE product]]<ref name='LIB:Riley_2006'/>: nickel transporter subunit product, ATP-binding component of ABC superfamily product, B3480 product, HydC product, HydD product
''ECK3464, b3480, JW3445, hydD, hydC''<ref name='LIB:Riley_2006'/>, hydC''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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NikE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
NikE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:nickel ABC transporter|nickel ABC transporter]]<ref name='LIB:EcoCyc10.6'/>
Component of [[:Category:Complex:nickel ABC transporter|nickel ABC transporter]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Nickel transport ATP-binding protein<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''nickel transporter subunit<ref name='LIB:Riley_2006'/>, ATP-binding component of ABC superfamily<ref name='LIB:Riley_2006'/>, B3480<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HydC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HydD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NikE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3464, hydC, hydD, JW3445, b3480''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:nikABCDER|nikABCDER]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:nikABCDER|nikABCDER]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=nikE&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12079]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001985&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=nikE&loc=MG1655%3A3615799..3616605,W3110%3A4022639..4021833,REL606%3A3548464..3549270,DH10B%3A3713544..3714350,BW2952%3A3504293..3505099]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3504293&end=3505099&gene=nikE&aa=mtllnisglshhyahggfngkhqhqavlnnvsltlksgetvallgrsgcgkstlarllvglespaqgniswrgeplaklnraqrkafrrdiqmvfqdsisavnprktvreilrepmrhllslkkseqlarasemlkavdlddsvldkrppqlsggqlqrvclaralavepkllildeavsnldlvlqagvirllkklqqqfgtaclfithdlrlverfcqrvmvmdngqivetqvvgekltfssdagrvlqnavlpafpvrrrttekv]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=nikE+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=nikE]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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Mutants display nickel-remediated formate hydrogen-lyase, hydrogenase, and hydrogenase-related fumarase defects.  Overexpression causes abnormal biofilm architecture.<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:47, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

nikE

Gene Synonym(s)

ECK3464, b3480, JW3445, hydD, hydC[1], hydC

Product Desc.

NikE[2][3];

Component of nickel ABC transporter[2][3]

Nickel transport ATP-binding protein[4]

Product Synonyms(s)

nickel transporter subunit[1], ATP-binding component of ABC superfamily[1], B3480[2][1], HydC[2][1], HydD[2][1], NikE[2][1] , ECK3464, hydC, hydD, JW3445, b3480

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): nikABCDER[2]

Regulation/Activity
Quick Links



        

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Notes

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Mutants display nickel-remediated formate hydrogen-lyase, hydrogenase, and hydrogenase-related fumarase defects. Overexpression causes abnormal biofilm architecture.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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