FAMSBASE: Difference between revisions

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{{Pagetop}}
[[Category:Databases]]
[[Category:Protein Databases]]
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'''FAMSBASE'''
'''You can help [[EcoliWiki]] by editing the content of this page.  For information about obtaining editing privileges, see [[E._coli_Wiki:Membership]]''' 
[[Category:Databases]]
{|{{Prettytable}} width='30%' align = 'right'
|- align='center' bgcolor = '#ddddff'
|  colspan = '2' | '''{{PAGENAME}}'''
|-
|-
| width='30%' | Who:
!align=left {{table heading style}} |Link/URL:
| ''proprietor''
||
[http://daisy.nagahama-i-bio.ac.jp/Famsbase/ FAMSBASE]
|-
|-
| width='30%' | What:
!align=left {{table heading style}} |What:
| ''short description''
||
Protein structure models by homology modeling
|-
|-
| Where:
!align=left {{table heading style}} |Who:
| [http://{{{1|link}}} {{PAGENAME}}]
||
*Hideaki Umeyama
**Kitasato University
 
*Mitiko Go
**Nagahama Institute of Bio-Science and Technology Japan
|-
|-
| Updates
!align=left {{table heading style}} |Updates:
|
||
<i> Last Updated: May 2005</i>
|-
|-
| Upcoming events
!align=left {{table heading style}} |Upcoming events:
| ''link to event calendar, if applicable''
||
 
|-
|-
| Web Services
!align=left {{table heading style}} |Web Services:
|
||
 
 
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=About {{PAGENAME}}=
=About {{PAGENAME}}=
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[http://{{{1|link}}} {{PAGENAME}}] is...
=Content=
=Content=
[http://daisy.nagahama-i-bio.ac.jp/Famsbase/  {{PAGENAME}}]<ref name='PMID:12520053'>PMID:12520053</ref> provides automated homology modeling of protein structures.
=Using {{PAGENAME}}=
=Using {{PAGENAME}}=
FAMSBASE requires a login for full access, but an anonymous public login says that it allows searching for ORFs with 3D models.
==Browsing==
==Browsing==
Following the public login link, many queries take you to a page that asks you to create an account.  However, without creating an account, you can view a list of Proteins with FAMSBASE models.  This can be restricted to a particular genome by clicking a checkbox for the desired genome.  The output gives psiblast scores and links to other FAMSBASE analysis pages (which need a login) and to [[GTOP]]. The ones I tested did not link properly to [[GTOP]].
==Searching==
==Searching==
==Usage examples==
==Usage examples==
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==Web Services/API==
==Web Services/API==
=Discussion=
=Discussion=
==Trackbacks==
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=References=
=References=
{{BacktoTop}}
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=External Links=
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[http://{{{1|link}}} {{PAGENAME}}]
[http://daisy.nagahama-i-bio.ac.jp/Famsbase/  {{PAGENAME}}] URL: http://daisy.nagahama-i-bio.ac.jp/Famsbase/
==Discussion of {{PAGENAME}} on other websites==
==Discussion of {{PAGENAME}} on other websites==

Latest revision as of 00:11, 23 May 2010

You can help EcoliWiki by editing the content of this page. For information about becoming a registered user and obtaining editing privileges, see Help:Accounts.

Link/URL:

FAMSBASE

What:

Protein structure models by homology modeling

Who:
  • Hideaki Umeyama
    • Kitasato University
  • Mitiko Go
    • Nagahama Institute of Bio-Science and Technology Japan
Updates:

Last Updated: May 2005

Upcoming events:
Web Services:


edit table


About FAMSBASE

Content

FAMSBASE[1] provides automated homology modeling of protein structures.

Using FAMSBASE

FAMSBASE requires a login for full access, but an anonymous public login says that it allows searching for ORFs with 3D models.

Browsing

Following the public login link, many queries take you to a page that asks you to create an account. However, without creating an account, you can view a list of Proteins with FAMSBASE models. This can be restricted to a particular genome by clicking a checkbox for the desired genome. The output gives psiblast scores and links to other FAMSBASE analysis pages (which need a login) and to GTOP. The ones I tested did not link properly to GTOP.

Searching

Usage examples

Add links to additional pages describing success stories here.

Other sites with related content

Technology

Web Services/API

Discussion

References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ Yamaguchi, A et al. (2003) Enlarged FAMSBASE: protein 3D structure models of genome sequences for 41 species. Nucleic Acids Res. 31 463-8 PubMed

External Links

FAMSBASE URL: http://daisy.nagahama-i-bio.ac.jp/Famsbase/

Discussion of FAMSBASE on other websites

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