tatD:Quickview: Difference between revisions

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{|   id="O49b02632210e7"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[tatD:Gene|''tatD]]'' (synonyms: ''ECK3833, b4483, JW5931, mttC, yigWX, yigW, yigX, b3841 (obsolete), b3840 (obsolete)'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''tatD''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[tatD:Gene_Product(s)|TatD product]]<ref name='LIB:Riley_2006'/>: DNase, magnesium-dependent product, YigX product, YigW product, MttC product, B4483 product
''ECK3833, b4483, JW5931, mttC, yigWX, yigW, yigX, b3841 (obsolete), b3840 (obsolete)''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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magnesium-dependent DNase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
magnesium-dependent DNase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Mg-dependent cytoplasmic DNase; last gene in tatA operon, mutant has no Tat phenotype<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''DNase, magnesium-dependent<ref name='LIB:Riley_2006'/>, YigX<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YigW<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MttC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TatD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B4483<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3833, JW5931, mttC, yigW, yigX, b4483''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:tatD|tatD]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:tatD|tatD]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=tatD&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11481]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001439&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=tatD&loc=MG1655%3A4021577..4022359,W3110%3A3613127..3612345,REL606%3A4002025..4002807,DH10B%3A4120497..4121279,BW2952%3A3911246..3912028]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3911246&end=3912028&gene=tatD&aa=mfdigvnltssqfakdrddvvacafdagvngllitgtnlresqqaqklarqysscwstagvhphdssqwqaateeaiielaaqpevvaigecgldfnrnfstpeeqerafvaqlriaadlnmpvfmhcrdaherfmtllepwldklpgavlhcftgtreemqacvahgiyigitgwvcderrglelrellplipaekllietdapyllprdltpkpssrrnepahlphilqriahwrgedaawlaattdanvktlfgiaf]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=tatD+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=tatD]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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False positive lipoprotein prediction, unprocessed, verified amino terminus.<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:45, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

tatD

Gene Synonym(s)

ECK3833, b4483, JW5931, mttC, yigWX, yigW, yigX, b3841 (obsolete), b3840 (obsolete)[1][2]

Product Desc.

magnesium-dependent DNase[2][3]

Mg-dependent cytoplasmic DNase; last gene in tatA operon, mutant has no Tat phenotype[4]

Product Synonyms(s)

DNase, magnesium-dependent[1], YigX[2][1], YigW[2][1], MttC[2][1], TatD[2][1], B4483[2][1] , ECK3833, JW5931, mttC, yigW, yigX, b4483

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): tatD[2]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


False positive lipoprotein prediction, unprocessed, verified amino terminus.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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