yhcN:Quickview: Difference between revisions

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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[yhcN:Gene|''yhcN]]'' (synonyms: ''ECK3227, b3238, JW5540'')<ref name='LIB:Riley_2006'/>
''yhcN''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[yhcN:Gene_Product(s)|YhcN product]]<ref name='LIB:Riley_2006'/>: conserved protein product, B3238 product
''ECK3227, b3238, JW5540''<ref name='LIB:Riley_2006'/>, JW5540''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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conserved hypothetical protein<ref name='LIB:EcoCyc10.6'/> conserved protein<ref name='LIB:EcoCyc11.1'/>  
conserved hypothetical protein<ref name='LIB:EcoCyc10.6'/>; conserved protein<ref name='LIB:EcoCyc11.1'/>


Periplasmic protein, YhcN family, function unknown<ref name='LIB:EcoGene'/>
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
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''conserved protein<ref name='LIB:Riley_2006'/>, B3238<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhcN<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3227, JW5540, b3238''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:yhcN|yhcN]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:yhcN|yhcN]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yhcN&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7683]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120004230&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yhcN&loc=MG1655%3A3383560..3383823,W3110%3A3385393..3385656,REL606%3A3313435..3313698,DH10B%3A3481305..3481568,BW2952%3A3270708..3270971]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3270708&end=3270971&gene=yhcN&aa=mghetkaqlkdyvevkimkikttvaalsvlsvlsfgafaadsidaaqaqnreaigtvsvsgvasspmdmremlnkkaeekgatayqitearsgdtwhataelyk]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yhcN+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yhcN]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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22 aa signal peptide cleavage and periplasmic localization of YhcN have been experimentally verified, Mitchell, R., Del Campo, M., Hus, N. and Rudd, K.E., unpublished results. EvgAS regulon.<ref name='LIB:EcoGene'/>
YhcN is a member of the [[YhcN_Family]] of paralogs.<ref name='PMID:9588799'/>




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==References==
==References==
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Latest revision as of 21:41, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

yhcN

Gene Synonym(s)

ECK3227, b3238, JW5540[1], JW5540

Product Desc.

conserved hypothetical protein[2]; conserved protein[3]

Periplasmic protein, YhcN family, function unknown[4]

Product Synonyms(s)

conserved protein[1], B3238[2][1], YhcN[2][1] , ECK3227, JW5540, b3238

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yhcN[2]

Regulation/Activity
Quick Links



        

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Notes

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22 aa signal peptide cleavage and periplasmic localization of YhcN have been experimentally verified, Mitchell, R., Del Campo, M., Hus, N. and Rudd, K.E., unpublished results. EvgAS regulon.[4]

YhcN is a member of the YhcN_Family of paralogs.[5]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Rudd, KE et al. (1998) Low molecular weight proteins: a challenge for post-genomic research. Electrophoresis 19 536-44 PubMed
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