panD:Quickview: Difference between revisions

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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[panD:Gene|''panD]]'' (synonyms: ''ECK0130, b0131, JW0127'')<ref name='LIB:Riley_2006'/>
''panD''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[panD:Gene_Product(s)|PanD product, PanD product]]<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>: B0131 product
''ECK0130, b0131, JW0127''<ref name='LIB:Riley_2006'/>, JW0127''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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PanD &alpha; cleavage product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
PanD α & β cleavage products<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:aspartate 1-decarboxylase|aspartate 1-decarboxylase]]<ref name='LIB:EcoCyc11.1'/>
Component of [[:Category:Complex:aspartate 1-decarboxylase|aspartate 1-decarboxylase]]<ref name='LIB:EcoCyc11.1'/>


Aspartate 1-decarboxylase; pantothenate biosynthesis; residues 1-24 cleaved, constitute the beta chain; C-terminal (102aa) constitutes alpha chain<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''aspartate 1-decarboxylase<ref name='LIB:Riley_2006'/>, B0131<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0130, JW0127, b0131''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:panD|panD]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:panD|panD]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=panD&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11747]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001685&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=panD&loc=MG1655%3A146694..146314,W3110%3A146694..146314,DH10B%3A120798..120418,REL606%3A149497..149117,BW2952%3A146313..146693]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=146313&end=146693&gene=panD&aa=mirtmlqgklhrvkvthadlhyegscaidqdfldaagileneaidiwnvtngkrfstyaiaaergsriisvngaaahcasvgdiviiasfvtmpdeeartwrpnvayfegdnemkrtakaipvqva]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=panD+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=panD]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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Mutants have altered acyl-CoA pools. N-terminus of alpha subunit (Ser25) is modified to pyruvic acid and involved in catalysis. Replacing normally modified Ser25 with an alanine inactivates PanD. Sequencing citation: Merkel,W.K. and Nichols,B.P., Nucleotide sequence of the Escherichia coli panBCD gene cluster, unpublished (1993) as cited in GenBank accession number L17086. Aspartate decarboxylase activity was confirmed in K-12 when it was first shown to be PanD (Cronan, 1980).<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:47, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

panD

Gene Synonym(s)

ECK0130, b0131, JW0127[1], JW0127

Product Desc.

PanD α & β cleavage products[2][3];

Component of aspartate 1-decarboxylase[3]

Aspartate 1-decarboxylase; pantothenate biosynthesis; residues 1-24 cleaved, constitute the beta chain; C-terminal (102aa) constitutes alpha chain[4]

Product Synonyms(s)

aspartate 1-decarboxylase[1], B0131[2][1] , ECK0130, JW0127, b0131

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): panD[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


Mutants have altered acyl-CoA pools. N-terminus of alpha subunit (Ser25) is modified to pyruvic acid and involved in catalysis. Replacing normally modified Ser25 with an alanine inactivates PanD. Sequencing citation: Merkel,W.K. and Nichols,B.P., Nucleotide sequence of the Escherichia coli panBCD gene cluster, unpublished (1993) as cited in GenBank accession number L17086. Aspartate decarboxylase activity was confirmed in K-12 when it was first shown to be PanD (Cronan, 1980).[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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