rpoC:Evolution: Difference between revisions

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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="C46ac12843f9ed"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Bos taurus''   
''Bos taurus''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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From Inparanoid:20070104  
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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From Inparanoid:20070104  
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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From Inparanoid:20070104  
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
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''Pan troglodytes''   
''Pan troglodytes''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
From SHIGELLACYC  
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''E. coli'' O157
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RPOC
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From ECOO157CYC
 
|- class="tableEdit_footer"
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_418415&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_418415&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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|- {{table_heading_style}}
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF04998 PF04998  RNA polymerase Rpb1, domain 5]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF04983 PF04983  RNA polymerase Rpb1, domain 3]
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|-
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF05000 PF05000  RNA polymerase Rpb1, domain 4]
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|-
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF04997 PF04997  RNA polymerase Rpb1, domain 1]
|
|-
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF00623 PF00623  RNA polymerase Rpb1, domain 2]
|
|-  
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
|
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF04997 PFAM:PF04997]
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19376:SF4 PTHR19376:SF4]
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|-class='sortbottom'
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=64484 SUPERFAMILY:64484]
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|-
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[[EcoCyc]]
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EcoCyc:EG10895
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10895
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[RegulonDB]]
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RegulonDB:ECK120000886
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[EchoBASE]]
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EchoBASE:EB0888
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[ASAP]]
|
ASAP:ABE-0013043
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
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!|Name!!URL!!Comments
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==References==
==References==
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{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
[[Category:Genes with homologs in Anopheles gambiae ]][[Category:Genes with homologs in Apis mellifera ]][[Category:Genes with homologs in Arabidopsis thaliana ]][[Category:Genes with homologs in Bos taurus ]][[Category:Genes with homologs in Caenorhabditis briggsae ]][[Category:Genes with homologs in Caenorhabditis elegans ]][[Category:Genes with homologs in Canis familiaris ]][[Category:Genes with homologs in Ciona intestinalis ]][[Category:Genes with homologs in Dictyostelium discoideum ]][[Category:Genes with homologs in Drosophila melanogaster ]][[Category:Genes with homologs in Drosophila pseudoobscura ]][[Category:Genes with homologs in Gallus gallus ]][[Category:Genes with homologs in Homo sapiens ]][[Category:Genes with homologs in Macaca mulatta ]][[Category:Genes with homologs in Monodelphis domestica ]][[Category:Genes with homologs in Mus musculus ]][[Category:Genes with homologs in Oryza gramene ]][[Category:Genes with homologs in Pan troglodytes ]][[Category:Genes with homologs in Rattus norvegicus ]][[Category:Genes with homologs in Saccharomyces cerevisiae ]][[Category:Genes with homologs in Schizosaccharomyces pombe ]][[Category:Genes with homologs in Takifugu rubripes ]][[Category:Genes with homologs in Tetraodon nigroviridis ]][[Category:Genes with homologs in Xenopus tropicalis ]][[Category:Genes with homologs in Shigella flexneri ]][[Category:Genes with homologs in E. coli O157]]</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Genes with homologs in Anopheles gambiae ]]
[[Category:Genes with homologs in Apis mellifera ]]
[[Category:Genes with homologs in Arabidopsis thaliana ]]
[[Category:Genes with homologs in Bos taurus ]]
[[Category:Genes with homologs in Caenorhabditis briggsae ]]
[[Category:Genes with homologs in Caenorhabditis elegans ]]
[[Category:Genes with homologs in Canis familiaris ]]
[[Category:Genes with homologs in Ciona intestinalis ]]
[[Category:Genes with homologs in Dictyostelium discoideum ]]
[[Category:Genes with homologs in Drosophila melanogaster ]]
[[Category:Genes with homologs in Drosophila pseudoobscura ]]
[[Category:Genes with homologs in Gallus gallus ]]
[[Category:Genes with homologs in Homo sapiens ]]
[[Category:Genes with homologs in Macaca mulatta ]]
[[Category:Genes with homologs in Monodelphis domestica ]]
[[Category:Genes with homologs in Mus musculus ]]
[[Category:Genes with homologs in Oryza gramene ]]
[[Category:Genes with homologs in Pan troglodytes ]]
[[Category:Genes with homologs in Rattus norvegicus ]]
[[Category:Genes with homologs in Saccharomyces cerevisiae ]]
[[Category:Genes with homologs in Schizosaccharomyces pombe ]]
[[Category:Genes with homologs in Takifugu rubripes ]]
[[Category:Genes with homologs in Tetraodon nigroviridis ]]
[[Category:Genes with homologs in Xenopus tropicalis ]]
[[Category:Genes with homologs in Shigella flexneri ]]
[[Category:Genes with homologs in E. coli O157]]

Latest revision as of 08:37, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000010305 (score: 1.000; bootstrap: 96%)
  • ENSANGP00000017502 (score: 0.117)
  • ENSANGP00000008667 (score: 0.060)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000028140 (score: 1.000; bootstrap: 100%)
  • ENSAPMP00000006261 (score: 0.180)
  • ENSAPMP00000025187 (score: 0.098)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G35800 (score: 1.000; bootstrap: 100%)
  • AT5G60040 (score: 0.119)
  • AT3G57660 (score: 0.079)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000013100 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000017638 (score: 0.114)
  • ENSBTAP00000008496 (score: 0.056)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00027817 (score: 1.000; bootstrap: 100%)
  • WBGene00028171 (score: 0.132)
  • WBGene00039661 (score: 0.080)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00000123 (score: 1.000; bootstrap: 100%)
  • WBGene00004411 (score: 0.132)
  • WBGene00012999 (score: 0.077)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000024423 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000022912 (score: 0.118)
  • ENSCAFP00000011333 (score: 0.071)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000016160 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000018127 (score: 0.126)
  • ENSCINP00000015751 (score: 0.064)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0215406 (score: 1.000; bootstrap: 100%)
  • DDB0216293 (score: 0.156)
  • DDB0216292 (score: 0.103)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0003277 (score: 1.000; bootstrap: 100%)
  • FBgn0019938 (score: 0.084)
  • FBgn0030687 (score: 0.080)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA13798-PA (score: 1.000; bootstrap: 100%)
  • GA10089-PA (score: 0.078)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000007915 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000025378 (score: 0.087)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000314949 (score: 1.000; bootstrap: 100%)
  • ENSP00000277783 (score: 0.121)
  • ENSP00000263857 (score: 0.055)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000007294 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000031094 (score: 0.118)
  • ENSMMUP00000020791 (score: 0.100)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000008691 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000001232 (score: 0.132)
  • ENSMODP00000011668 (score: 0.072)

From Inparanoid:20070104

Mus musculus

  • MGI:98086 (score: 1.000; bootstrap: 100%)
  • MGI:1096397 (score: 0.064)

From Inparanoid:20070104

Oryza gramene

  • P16024 (score: 1.000; bootstrap: 99%)
  • Q9XPS8 (score: 1.000; bootstrap: 99%)
  • Q6L3A6 (score: 0.992)
  • Q6ENX2 (score: 0.992)
  • Q6QY82 (score: 0.937)
  • Q6QY19 (score: 0.937)
  • P12092 (score: 0.937)
  • Q6ENI3 (score: 0.937)
  • Q8S1Q5 (score: 0.937)
  • Q6Z1U9 (score: 0.936)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000014817 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000046047 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000013587 (score: 0.065)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YDL140C (score: 1.000; bootstrap: 100%)
  • YOR116C (score: 0.135)
  • YOR341W (score: 0.077)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC28F22 (score: 1.000; bootstrap: 100%)
  • SPBC6518c (score: 0.130)
  • SPBC4C35c (score: 0.086)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000158879 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000174091 (score: 0.136)
  • NEWSINFRUP00000157438 (score: 0.076)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00019215001 (score: 1.000; bootstrap: 100%)
  • GSTENP00024646001 (score: 0.117)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000009649 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

RPOC

From SHIGELLACYC

E. coli O157

RPOC

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF04998 RNA polymerase Rpb1, domain 5

Pfam (EcoliWiki Page)

PF04983 RNA polymerase Rpb1, domain 3

Pfam (EcoliWiki Page)

PF05000 RNA polymerase Rpb1, domain 4

Pfam (EcoliWiki Page)

PF04997 RNA polymerase Rpb1, domain 1

Pfam (EcoliWiki Page)

PF00623 RNA polymerase Rpb1, domain 2

Panther (EcoliWiki Page)

PTHR19376:SF4

Superfamily (EcoliWiki Page)

SUPERFAMILY:64484

EcoCyc

EcoCyc:EG10895

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10895

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000886

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0888

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013043

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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Categories

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