gpr:Evolution: Difference between revisions

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Evolution

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism	Homologs (Statistics)	Comments
Anopheles gambiae	ENSANGP00000006086 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Apis mellifera	ENSAPMP00000017335 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Arabidopsis thaliana	AT1G04690 (score: 1.000; bootstrap: 98%)	From Inparanoid:20070104
Bos taurus	ENSBTAP00000024576 (score: 1.000; bootstrap: 97%) ENSBTAP00000010684 (score: 0.725) ENSBTAP00000019888 (score: 0.450)	From Inparanoid:20070104
Canis familiaris	ENSCAFP00000028868 (score: 1.000; bootstrap: 98%) ENSCAFP00000013013 (score: 0.584) ENSCAFP00000024848 (score: 0.523)	From Inparanoid:20070104
Ciona intestinalis	ENSCINP00000005427 (score: 1.000; bootstrap: 97%)	From Inparanoid:20070104
Danio rerio	ZDB-GENE-050327-79 (score: 1.000; bootstrap: 99%) ZDB-CDNA-050327-79 (score: 1.000; bootstrap: 98%) ZDB-CDNA-050612-257 (score: 0.671)	From Inparanoid:20070104
Drosophila melanogaster	FBgn0001203 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Drosophila pseudoobscura	GA17075-PA (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Gallus gallus	ENSGALP00000001339 (score: 1.000; bootstrap: 99%) ENSGALP00000032335 (score: 0.607)	From Inparanoid:20070104
Homo sapiens	ENSP00000340824 (score: 1.000; bootstrap: 99%) ENSP00000273475 (score: 0.704) ENSP00000302719 (score: 0.604)	From Inparanoid:20070104
Macaca mulatta	ENSMMUP00000022317 (score: 1.000; bootstrap: 96%) ENSMMUP00000022138 (score: 0.549)	From Inparanoid:20070104
Monodelphis domestica	ENSMODP00000019658 (score: 1.000; bootstrap: 99%) ENSMODP00000007916 (score: 0.673) ENSMODP00000009371 (score: 0.589)	From Inparanoid:20070104
Mus musculus	MGI:109239 (score: 1.000; bootstrap: 99%) MGI:109155 (score: 0.734) MGI:1336208 (score: 0.289)	From Inparanoid:20070104
Oryza gramene	Q6K697 (score: 1.000; bootstrap: 99%) Q40648 (score: 0.744)	From Inparanoid:20070104
Pan troglodytes	ENSPTRP00000014856 (score: 1.000; bootstrap: 99%) ENSPTRP00000026786 (score: 1.000; bootstrap: 98%) ENSPTRP00000044762 (score: 1.000; bootstrap: 99%)	From Inparanoid:20070104
Rattus norvegicus	ENSRNOP00000015840 (score: 1.000; bootstrap: 99%) ENSRNOP00000051084 (score: 0.734) ENSRNOP00000011523 (score: 0.595)	From Inparanoid:20070104
Schizosaccharomyces pombe	SPCC9656 (score: 1.000; bootstrap: 97%)	From Inparanoid:20070104
Takifugu rubripes	NEWSINFRUP00000167043 (score: 1.000; bootstrap: 99%) NEWSINFRUP00000159386 (score: 0.582) NEWSINFRUP00000155538 (score: 0.582) NEWSINFRUP00000133544 (score: 0.535) NEWSINFRUP00000159387 (score: 0.376)	From Inparanoid:20070104
Tetraodon nigroviridis	GSTENP00019063001 (score: 1.000; bootstrap: 99%) GSTENP00003421001 (score: 0.393) GSTENP00027578001 (score: 0.335) GSTENP00028447001 (score: 0.149) GSTENP00004469001 (score: 0.068)	From Inparanoid:20070104
Xenopus tropicalis	ENSXETP00000006343 (score: 1.000; bootstrap: 100%) ENSXETP00000019882 (score: 0.573) ENSXETP00000026821 (score: 0.558)	From Inparanoid:20070104
Shigella flexneri	S3249	From SHIGELLACYC
E. coli O157	Z4354	From ECOO157CYC
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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
Pfam (EcoliWiki Page)	PF00248 Aldo/keto reductase family
Superfamily (EcoliWiki Page)	SUPERFAMILY:51430
Panther (EcoliWiki Page)	PTHR11732:SF14
EcoCyc	EcoCyc:G7558	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG13010	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120004118	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB2831	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0009848	Escherichia coli str. K-12 substr. MG1655
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Name	URL	Comments
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References

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gpr:Evolution: Difference between revisions

Latest revision as of 08:35, 27 May 2013

Homologs in Other Organisms

Do-It-Yourself Web Tools

Notes

Families

Notes

Links

References

Categories

Navigation menu

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+{|   id="P46abf0c5ca8bb"  class=" tableEdit Evolution_homologs_table"
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-!Organism!!Homologs (Statistics)!!Comments
+!|Organism!!Homologs (Statistics)!!Comments
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 ''Anopheles gambiae''
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 ''Oryza gramene''
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 ''Shigella flexneri''
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 From SHIGELLACYC
-|-class='sortbottom'
+|-
-|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.49975.P46abf0c5ca8bb&page=49975&pagename={{FULLPAGENAMEE}} edit table] || ||
+|
+''E. coli'' O157
+|
+Z4354
+|
+From ECOO157CYC
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.49975.P46abf0c5ca8bb&page=49975&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.49975.P46abf0c5ca8bb-->
-{{Evolution_homologs_table_help}}
 ===Do-It-Yourself Web Tools===
 *[http://130.14.29.110/BLAST/ BLAST]
 *[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
-*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417474&idtype=all&start=on&species=All&conf=0.05 InParanoid]
+*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417474&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
 *[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
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-<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
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 |- {{table_heading_style}}
-!Database!!Accession!!Notes
+!|Database!!Accession!!Notes
 |-
+|
+[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
+|
+[http://pfam.janelia.org/family/PF00248 PF00248  Aldo/keto reductase family]
+|
+|-
+|
+[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
+|
+[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=51430 SUPERFAMILY:51430]
+|
+|-
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-[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])
+[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
 |
-[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00248 PFAM:PF00248]
+[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11732:SF14 PTHR11732:SF14]
 |
-|-class='sortbottom'
+|-
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+|
+[[EcoCyc]]
+|
+EcoCyc:G7558
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[EcoGene]]
+|
+EcoGene:EG13010
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[RegulonDB]]
+|
+RegulonDB:ECK120004118
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[EchoBASE]]
+|
+EchoBASE:EB2831
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[ASAP]]
+|
+ASAP:ABE-0009848
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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-{{Links_help}}
 ==References==
 {{BacktoTop}}
 {{RefHelp}}
-<references/>
+<references />
-<noinclude>
 __NOTOC__
-[[Category:Genes with homologs in Anopheles gambiae ]][[Category:Genes with homologs in Apis mellifera ]][[Category:Genes with homologs in Arabidopsis thaliana ]][[Category:Genes with homologs in Bos taurus ]][[Category:Genes with homologs in Canis familiaris ]][[Category:Genes with homologs in Ciona intestinalis ]][[Category:Genes with homologs in Danio rerio ]][[Category:Genes with homologs in Drosophila melanogaster ]][[Category:Genes with homologs in Drosophila pseudoobscura ]][[Category:Genes with homologs in Gallus gallus ]][[Category:Genes with homologs in Homo sapiens ]][[Category:Genes with homologs in Macaca mulatta ]][[Category:Genes with homologs in Monodelphis domestica ]][[Category:Genes with homologs in Mus musculus ]][[Category:Genes with homologs in Oryza gramene ]][[Category:Genes with homologs in Pan troglodytes ]][[Category:Genes with homologs in Rattus norvegicus ]][[Category:Genes with homologs in Schizosaccharomyces pombe ]][[Category:Genes with homologs in Takifugu rubripes ]][[Category:Genes with homologs in Tetraodon nigroviridis ]][[Category:Genes with homologs in Xenopus tropicalis ]][[Category:Genes with homologs in Shigella flexneri ]][[Category:Genes with homologs in E. coli O157]]</noinclude>
+===Categories===
+{{BacktoTop}}
+[[Category:Genes with homologs in Anopheles gambiae ]]
+[[Category:Genes with homologs in Apis mellifera ]]
+[[Category:Genes with homologs in Arabidopsis thaliana ]]
+[[Category:Genes with homologs in Bos taurus ]]
+[[Category:Genes with homologs in Canis familiaris ]]
+[[Category:Genes with homologs in Ciona intestinalis ]]
+[[Category:Genes with homologs in Danio rerio ]]
+[[Category:Genes with homologs in Drosophila melanogaster ]]
+[[Category:Genes with homologs in Drosophila pseudoobscura ]]
+[[Category:Genes with homologs in Gallus gallus ]]
+[[Category:Genes with homologs in Homo sapiens ]]
+[[Category:Genes with homologs in Macaca mulatta ]]
+[[Category:Genes with homologs in Monodelphis domestica ]]
+[[Category:Genes with homologs in Mus musculus ]]
+[[Category:Genes with homologs in Oryza gramene ]]
+[[Category:Genes with homologs in Pan troglodytes ]]
+[[Category:Genes with homologs in Rattus norvegicus ]]
+[[Category:Genes with homologs in Schizosaccharomyces pombe ]]
+[[Category:Genes with homologs in Takifugu rubripes ]]
+[[Category:Genes with homologs in Tetraodon nigroviridis ]]
+[[Category:Genes with homologs in Xenopus tropicalis ]]
+[[Category:Genes with homologs in Shigella flexneri ]]
+[[Category:Genes with homologs in E. coli O157]]

gpr:Evolution: Difference between revisions

Latest revision as of 08:35, 27 May 2013

Homologs in Other Organisms

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