msbA:Evolution: Difference between revisions

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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="K46abb250f0c81"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Apis mellifera''   
''Apis mellifera''   
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From Inparanoid:20070104  
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Bos taurus''   
''Bos taurus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Danio rerio''   
''Danio rerio''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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From Inparanoid:20070104  
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Mus musculus''   
''Mus musculus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Pan troglodytes''   
''Pan troglodytes''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Rattus norvegicus''   
''Rattus norvegicus''   
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From Inparanoid:20070104  
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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From Inparanoid:20070104  
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''Takifugu rubripes''   
''Takifugu rubripes''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
From SHIGELLACYC  
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''E. coli'' O157
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MSBA
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From ECOO157CYC
 
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_415434&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_415434&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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|- {{table_heading_style}}
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00664 PF00664  ABC transporter transmembrane region]
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|-
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00005 PF00005  ABC transporter]
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|-
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24221:SF91 PTHR24221:SF91]
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|-
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52540 SUPERFAMILY:52540]
|
|-  
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00664 PFAM:PF00664]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=90123 SUPERFAMILY:90123]
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[[EcoCyc]]
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EcoCyc:EG10613
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10613
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[RegulonDB]]
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RegulonDB:ECK120000606
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[EchoBASE]]
|
EchoBASE:EB0608
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[ASAP]]
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ASAP:ABE-0003113
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
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==References==
==References==
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{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
[[Category:Genes with homologs in Anopheles gambiae ]][[Category:Genes with homologs in Apis mellifera ]][[Category:Genes with homologs in Arabidopsis thaliana ]][[Category:Genes with homologs in Bos taurus ]][[Category:Genes with homologs in Caenorhabditis briggsae ]][[Category:Genes with homologs in Caenorhabditis elegans ]][[Category:Genes with homologs in Canis familiaris ]][[Category:Genes with homologs in Ciona intestinalis ]][[Category:Genes with homologs in Danio rerio ]][[Category:Genes with homologs in Dictyostelium discoideum ]][[Category:Genes with homologs in Drosophila melanogaster ]][[Category:Genes with homologs in Drosophila pseudoobscura ]][[Category:Genes with homologs in Gallus gallus ]][[Category:Genes with homologs in Homo sapiens ]][[Category:Genes with homologs in Macaca mulatta ]][[Category:Genes with homologs in Monodelphis domestica ]][[Category:Genes with homologs in Mus musculus ]][[Category:Genes with homologs in Oryza gramene ]][[Category:Genes with homologs in Pan troglodytes ]][[Category:Genes with homologs in Rattus norvegicus ]][[Category:Genes with homologs in Saccharomyces cerevisiae ]][[Category:Genes with homologs in Schizosaccharomyces pombe ]][[Category:Genes with homologs in Takifugu rubripes ]][[Category:Genes with homologs in Tetraodon nigroviridis ]][[Category:Genes with homologs in Xenopus tropicalis ]][[Category:Genes with homologs in Shigella flexneri ]][[Category:Genes with homologs in E. coli O157]]</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Genes with homologs in Anopheles gambiae ]]
[[Category:Genes with homologs in Apis mellifera ]]
[[Category:Genes with homologs in Arabidopsis thaliana ]]
[[Category:Genes with homologs in Bos taurus ]]
[[Category:Genes with homologs in Caenorhabditis briggsae ]]
[[Category:Genes with homologs in Caenorhabditis elegans ]]
[[Category:Genes with homologs in Canis familiaris ]]
[[Category:Genes with homologs in Ciona intestinalis ]]
[[Category:Genes with homologs in Danio rerio ]]
[[Category:Genes with homologs in Dictyostelium discoideum ]]
[[Category:Genes with homologs in Drosophila melanogaster ]]
[[Category:Genes with homologs in Drosophila pseudoobscura ]]
[[Category:Genes with homologs in Gallus gallus ]]
[[Category:Genes with homologs in Homo sapiens ]]
[[Category:Genes with homologs in Macaca mulatta ]]
[[Category:Genes with homologs in Monodelphis domestica ]]
[[Category:Genes with homologs in Mus musculus ]]
[[Category:Genes with homologs in Oryza gramene ]]
[[Category:Genes with homologs in Pan troglodytes ]]
[[Category:Genes with homologs in Rattus norvegicus ]]
[[Category:Genes with homologs in Saccharomyces cerevisiae ]]
[[Category:Genes with homologs in Schizosaccharomyces pombe ]]
[[Category:Genes with homologs in Takifugu rubripes ]]
[[Category:Genes with homologs in Tetraodon nigroviridis ]]
[[Category:Genes with homologs in Xenopus tropicalis ]]
[[Category:Genes with homologs in Shigella flexneri ]]
[[Category:Genes with homologs in E. coli O157]]

Latest revision as of 08:31, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000028387 (score: 1.000; bootstrap: 74%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000011902 (score: 1.000; bootstrap: 73%)
  • ENSAPMP00000035590 (score: 0.076)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G39040 (score: 1.000; bootstrap: 90%)
  • AT4G01830 (score: 0.088)
  • AT4G01820 (score: 0.085)
  • AT3G62150 (score: 0.084)
  • AT2G47000 (score: 0.080)
  • AT1G02520 (score: 0.080)
  • AT1G02530 (score: 0.071)
  • AT3G28860 (score: 0.050)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000007432 (score: 1.000; bootstrap: 87%)
  • ENSBTAP00000038269 (score: 0.382)
  • ENSBTAP00000003363 (score: 0.221)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00026762 (score: 1.000; bootstrap: 80%)
  • WBGene00028069 (score: 0.337)
  • WBGene00034271 (score: 0.334)
  • WBGene00037006 (score: 0.277)
  • WBGene00037005 (score: 0.269)
  • WBGene00023573 (score: 0.248)
  • WBGene00023577 (score: 0.243)
  • WBGene00023572 (score: 0.231)
  • WBGene00023575 (score: 0.231)
  • WBGene00037162 (score: 0.217)
  • WBGene00037161 (score: 0.212)
  • WBGene00033821 (score: 0.211)
  • WBGene00037165 (score: 0.175)
  • WBGene00032204 (score: 0.141)
  • WBGene00034135 (score: 0.137)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00003996 (score: 1.000; bootstrap: 81%)
  • WBGene00004003 (score: 0.330)
  • WBGene00003995 (score: 0.321)
  • WBGene00003997 (score: 0.279)
  • WBGene00003998 (score: 0.265)
  • WBGene00004008 (score: 0.245)
  • WBGene00004006 (score: 0.238)
  • WBGene00004007 (score: 0.222)
  • WBGene00004001 (score: 0.221)
  • WBGene00003999 (score: 0.220)
  • WBGene00004002 (score: 0.214)
  • WBGene00004009 (score: 0.212)
  • WBGene00004000 (score: 0.211)
  • WBGene00004005 (score: 0.148)
  • WBGene00004004 (score: 0.139)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000002684 (score: 1.000; bootstrap: 74%)
  • ENSCAFP00000002677 (score: 0.681)
  • ENSCAFP00000003871 (score: 0.488)
  • ENSCAFP00000017653 (score: 0.428)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000009257 (score: 1.000; bootstrap: 89%)
  • ENSCINP00000009176 (score: 0.717)
  • ENSCINP00000018552 (score: 0.484)
  • ENSCINP00000018541 (score: 0.460)
  • ENSCINP00000014551 (score: 0.333)
  • ENSCINP00000015244 (score: 0.329)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050410-6 (score: 1.000; bootstrap: 99%)
  • ZDB-CDNA-050410-6 (score: 1.000; bootstrap: 99%)
  • ZDB-GENE-030616-225 (score: 0.059)
  • ZDB-GENE-030616-245 (score: 0.052)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0201666 (score: 1.000; bootstrap: 85%)
  • DDB0208540 (score: 0.099)
  • DDB0229852 (score: 0.064)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0010241 (score: 1.000; bootstrap: 59%)
  • FBgn0004512 (score: 0.307)
  • FBgn0004513 (score: 0.285)
  • FBgn0035695 (score: 0.255)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA21135-PA (score: 1.000; bootstrap: 57%)
  • GA17746-PA (score: 0.300)
  • GA10136-PA (score: 0.288)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000014477 (score: 1.000; bootstrap: 98%)
  • ENSGALP00000017711 (score: 0.512)
  • ENSGALP00000017690 (score: 0.419)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000265724 (score: 1.000; bootstrap: 87%)
  • ENSP00000265723 (score: 0.729)
  • ENSP00000263817 (score: 0.447)
  • ENSP00000258738 (score: 0.287)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000018185 (score: 1.000; bootstrap: 75%)
  • ENSMMUP00000014135 (score: 0.361)
  • ENSMMUP00000008900 (score: 0.344)
  • ENSMMUP00000010273 (score: 0.211)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000012733 (score: 1.000; bootstrap: 93%)
  • ENSMODP00000012812 (score: 0.798)
  • ENSMODP00000012716 (score: 0.697)
  • ENSMODP00000009711 (score: 0.431)

From Inparanoid:20070104

Mus musculus

  • MGI:97568 (score: 1.000; bootstrap: 85%)
  • MGI:97570 (score: 1.000; bootstrap: 86%)
  • MGI:97569 (score: 0.700)
  • MGI:1351619 (score: 0.417)

From Inparanoid:20070104

Oryza gramene

  • Q7FMW2 (score: 1.000; bootstrap: 76%)
  • Q5JLI1 (score: 0.706)
  • Q8GU71 (score: 0.704)
  • Q7FMW3 (score: 0.619)
  • Q5JLI4 (score: 0.605)
  • Q8RVT7 (score: 0.599)
  • Q8GU72 (score: 0.595)
  • Q8GU73 (score: 0.571)
  • Q6Z6U9 (score: 0.555)
  • Q9LGX1 (score: 0.541)
  • Q8GU69 (score: 0.534)
  • Q5N9P2 (score: 0.523)
  • Q8GU76 (score: 0.341)
  • Q8GU77 (score: 0.340)
  • Q8GU75 (score: 0.333)
  • Q7XUZ8 (score: 0.331)
  • Q6UC91 (score: 0.318)
  • Q7EZL2 (score: 0.314)
  • Q6YUU5 (score: 0.308)
  • Q8GU78 (score: 0.307)
  • Q6UNK5 (score: 0.298)
  • O23998 (score: 0.270)
  • Q8GU81 (score: 0.265)
  • Q7XUP9 (score: 0.265)
  • Q8GU74 (score: 0.264)
  • Q8GU68 (score: 0.258)
  • Q8GU67 (score: 0.250)
  • Q7EYH1 (score: 0.246)
  • Q8H7L0 (score: 0.236)
  • Q8GU79 (score: 0.235)
  • Q8GU80 (score: 0.223)
  • Q7EZL3 (score: 0.183)
  • Q9FSQ6 (score: 0.151)
  • Q7EZL1 (score: 0.114)
  • Q5KQM4 (score: 0.095)
  • Q6Z894 (score: 0.077)
  • Q5JN97 (score: 0.057)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000033133 (score: 1.000; bootstrap: 89%)
  • ENSPTRP00000045311 (score: 0.731)
  • ENSPTRP00000021540 (score: 0.274)
  • ENSPTRP00000032398 (score: 0.110)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000011166 (score: 1.000; bootstrap: 87%)
  • ENSRNOP00000038721 (score: 0.840)
  • ENSRNOP00000042556 (score: 0.705)
  • ENSRNOP00000045152 (score: 0.281)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YPL270W (score: 1.000; bootstrap: 74%)
  • YLR188W (score: 0.217)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPCC6633 (score: 1.000; bootstrap: 72%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000161094 (score: 1.000; bootstrap: 81%)
  • NEWSINFRUP00000161095 (score: 0.700)
  • NEWSINFRUP00000172828 (score: 0.412)
  • NEWSINFRUP00000182094 (score: 0.386)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00024825001 (score: 1.000; bootstrap: 80%)
  • GSTENP00034001001 (score: 0.370)
  • GSTENP00034000001 (score: 0.333)
  • GSTENP00034623001 (score: 0.254)
  • GSTENP00033999001 (score: 0.066)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000049177 (score: 1.000; bootstrap: 86%)

From Inparanoid:20070104

Shigella flexneri

MSBA

From SHIGELLACYC

E. coli O157

MSBA

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00664 ABC transporter transmembrane region

Pfam (EcoliWiki Page)

PF00005 ABC transporter

Panther (EcoliWiki Page)

PTHR24221:SF91

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Superfamily (EcoliWiki Page)

SUPERFAMILY:90123

EcoCyc

EcoCyc:EG10613

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10613

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000606

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0608

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003113

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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