rlmC:Quickview: Difference between revisions

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{{Tab On|Quickview|rumA}}{{Tab|Gene|rumA}}{{Tab|Gene Product(s)|rumA}}{{Tab|Expression|rumA}}{{Tab|Evolution|rumA}}{{Tab|On One Page|rumA}}{{TabsBottom}}
{{Tab On|Quickview|rlmC}}{{Tab|Gene|rlmC}}{{Tab|Gene Product(s)|rlmC}}{{Tab|Expression|rlmC}}{{Tab|Evolution|rlmC}}{{Tab|On One Page|rlmC}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[rumA:Gene|''rumA]]'' (synonyms: ''ECK2779, b2785, JW2756, ygcA'')<ref name='LIB:Riley_2006'/>
''rlmC''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[rumA:Gene_Product(s)|RumA product]]<ref name='LIB:Riley_2006'/>: 23S rRNA (uracil-5)-methyltransferase product, B2785 product, YgcA product
''rumA, ECK2779, b2785, JW2756, ygcA''<ref name='LIB:Riley_2006'/>, ygcA''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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23S ribosomal RNA 5-methyluridine methyltransferase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
23S ribosomal RNA 5-methyluridine methyltransferase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


23S rRNA (uracil-5)-methyltransferase, responsible for modification at position U1939, SAM-dependent<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''23S rRNA (uracil-5)-methyltransferase<ref name='LIB:Riley_2006'/>, B2785<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgcA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RumA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2779, JW2756, ygcA, b2785''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:rumA|rumA]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:rumA|rumA]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=rlmC&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6449]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003049&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=rlmC&loc=MG1655%3A2913022..2911721,W3110%3A2913656..2912355,REL606%3A2803928..2802627,DH10B%3A3006900..3005599,BW2952%3A2798869..2800170]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2798869&end=2800170&gene=rlmC&aa=maqfysakrrtttrqiitvsvndldsfgqgvarhngktlfipgllpqenaevtvtedkkqyarakvvrrlsdsperetprcphfgvcggcqqqhasvdlqqrsksaalarlmkhdvseviadvpwgyrrrarlslnylpktqqlqmgfrkagssdivdvkqcpilapqleallpkvraclgslqamrhlghvelvqatsgtlmilrhtaplssadreklerfshsegldlylapdseiletvsgempwydsnglrltfsprdfiqvnagvnqkmvaralewldvqpedrvldlfcgmgnftlplatqaasvvgvegvpalvekgqqnarlnglqnvtfyhenleedvtkqpwakngfdkvlldparagaagvmqqiiklepirivyvscnpatlardseallkagytiarlamldmfphtghlesmvlfsrvk]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rlmC+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=rlmC]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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Although this purified proten had its N-terminus sequenced (reported in Medline 21883956, Agarwalla et al.) it is not included in the Verified set since translation was forced at the predicted start codon.  All other evidence does point to this being the correct start.  The initial Met is cleaved off.<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:46, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

rlmC

Gene Synonym(s)

rumA, ECK2779, b2785, JW2756, ygcA[1], ygcA

Product Desc.

23S ribosomal RNA 5-methyluridine methyltransferase[2][3]

23S rRNA (uracil-5)-methyltransferase, responsible for modification at position U1939, SAM-dependent[4]

Product Synonyms(s)

23S rRNA (uracil-5)-methyltransferase[1], B2785[2][1], YgcA[2][1], RumA[2][1] , ECK2779, JW2756, ygcA, b2785

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rumA[2]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


Although this purified proten had its N-terminus sequenced (reported in Medline 21883956, Agarwalla et al.) it is not included in the Verified set since translation was forced at the predicted start codon. All other evidence does point to this being the correct start. The initial Met is cleaved off.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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