hyaA:Quickview: Difference between revisions

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{|   id="U49aee951a0346"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[hyaA:Gene|''hyaA]]'' (synonyms: ''ECK0963, b0972, JW0954'')<ref name='LIB:Riley_2006'/>
''hyaA''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[hyaA:Gene_Product(s)|HyaA product]]<ref name='LIB:Riley_2006'/>: hydrogenase 1, small subunit product, B0972 product
''ECK0963, b0972, JW0954''<ref name='LIB:Riley_2006'/>, JW0954''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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hydrogenase 1, small subunit<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
hydrogenase 1, small subunit<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:hydrogenase 1|hydrogenase 1]]<ref name='LIB:EcoCyc10.6'/>
Component of [[:Category:Complex:hydrogenase 1|hydrogenase 1]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Hydrogenase 1 small subunit [NiFe], periplasmic<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''hydrogenase 1, small subunit<ref name='LIB:Riley_2006'/>, B0972<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HyaA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0963, JW0954, b0972''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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|-
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:hyaABCDEF|hyaABCDEF]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:hyaABCDEF|hyaABCDEF]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=hyaA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10468]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000461&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=hyaA&loc=MG1655%3A1031362..1032480,W3110%3A1032561..1033679,DH10B%3A1085290..1086408,REL606%3A1049230..1050348,BW2952%3A934330..935448]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=934330&end=935448&gene=hyaA&aa=mnneetfyqamrrqgvtrrsflkycslaatslglgagmapkiawalenkpripvvwihglectcctesfirsahplakdvilslisldyddtlmaaagtqaeevfediitqyngkyilavegnpplgeqgmfcissgrpfieklkraaagasaiiawgtcaswgcvqaarpnptqatpidkvitdkpiikvpgcppipdvmsaiitymvtfdrlpdvdrmgrplmfygqrihdkcyrrahfdagefvqswdddaarkgyclykmgckgpttynacsstrwndgvsfpiqsghgclgcaengfwdrgsfysrvvdipqmgthstadtvgltalgvvaaavgvhavasavdqrrrhnqqptetehqpgnedkqa]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=hyaA+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=hyaA]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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Verified Tat substrate: HyaA has a Tat-only (Class I) 45 aa signal peptide (Tullman-Ercek, 2007). Bound HyaB is co-exported. Repressed during biofilm formation.<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:55, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

hyaA

Gene Synonym(s)

ECK0963, b0972, JW0954[1], JW0954

Product Desc.

hydrogenase 1, small subunit[2][3];

Component of hydrogenase 1[2][3]

Hydrogenase 1 small subunit [NiFe], periplasmic[4]

Product Synonyms(s)

hydrogenase 1, small subunit[1], B0972[2][1], HyaA[2][1] , ECK0963, JW0954, b0972

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): hyaABCDEF[2]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


Verified Tat substrate: HyaA has a Tat-only (Class I) 45 aa signal peptide (Tullman-Ercek, 2007). Bound HyaB is co-exported. Repressed during biofilm formation.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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