PMID:21239586: Difference between revisions
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!align=left |Citation | |||
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'''Yamamoto, K, Ishihama, A, Busby, SJ and Grainger, DC''' (2011) The Escherichia coli K-12 MntR miniregulon includes dps, which encodes the major stationary-phase DNA-binding protein. ''J. Bacteriol.'' '''193''':1477-80 | |||
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!align=left |Abstract | |||
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Escherichia coli MntR protein is the Mn(2+)-responsive transcriptional repressor of the MntH manganese transporter. We have used chromatin immunoprecipitation to determine the distribution of Mn(2+)-MntR across the entire E. coli chromosome in vivo, and we report that MntR binds to only four targets, adjacent to the mntH, mntR, yebN, and dps genes. Unexpectedly, we found that dps expression is directly repressed by Mn(2+)-MntR. | |||
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!align=left |Links | |||
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[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21239586 PubMed] [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3067631 PMC3067631] | |||
Online version:[http://dx.doi.org/10.1128/JB.01230-10 10.1128/JB.01230-10] | |||
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!align=left |Keywords | |||
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Bacterial Outer Membrane Proteins/biosynthesis; Chromatin Immunoprecipitation; Chromosomes, Bacterial; DNA, Bacterial/metabolism; Escherichia coli K12/genetics; Escherichia coli K12/physiology; Escherichia coli Proteins/biosynthesis; Escherichia coli Proteins/metabolism; Gene Expression Regulation, Bacterial; Protein Binding; Regulon; Repressor Proteins/metabolism | |||
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==Significance {{HelpIcon|Help:Literature}} == | |||
{{LitSignificance}} | |||
== Useful Materials and Methods {{HelpIcon|Help:Literature}}== | |||
{{LitMaterials}} | |||
<span style="color:Red;">IMPORTANT!: This track is for E. coli strain BW25113 but is found under MG1655 since the array used was intended for MG1655!</span> | |||
==Annotations {{HelpIcon|Help:Literature}}== | |||
<protect><annotationlinks/></protect> | |||
== Data == | |||
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!|Strain/Organism!!Assay!!Analyte!!Variable Conditions!!Notes!!Links | |||
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BW25113 | |||
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ChIP-chip | |||
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MntR | |||
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This track is for E. coli strain BW25113 but is found under MG1655 since the array used was intended for MG1655. | |||
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* [http://heptamer.tamu.edu/cgi-bin/gb2/gbrowse/MG1655/?t=MntR Gbrowse] | |||
*[http://heptamer.tamu.edu/gbrowse2/Public/MG1655/21239586/21239586.Supplementary_Table_1_16_12_2010.bw BigWig] | |||
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==EcoliWiki Links {{HelpIcon|Help:Literature}} == | |||
{{LitLinks}} | |||
==See also== | |||
==References== | |||
{{RefHelp}} | |||
<references/> | |||
[[Category:Papers with tracks in Gbrowse]] | |||
[[Category:Ribosome profiling experiments]] | |||
Latest revision as of 04:37, 15 September 2013
| Citation |
Yamamoto, K, Ishihama, A, Busby, SJ and Grainger, DC (2011) The Escherichia coli K-12 MntR miniregulon includes dps, which encodes the major stationary-phase DNA-binding protein. J. Bacteriol. 193:1477-80 |
|---|---|
| Abstract |
Escherichia coli MntR protein is the Mn(2+)-responsive transcriptional repressor of the MntH manganese transporter. We have used chromatin immunoprecipitation to determine the distribution of Mn(2+)-MntR across the entire E. coli chromosome in vivo, and we report that MntR binds to only four targets, adjacent to the mntH, mntR, yebN, and dps genes. Unexpectedly, we found that dps expression is directly repressed by Mn(2+)-MntR. |
| Links |
PubMed PMC3067631 Online version:10.1128/JB.01230-10 |
| Keywords |
Bacterial Outer Membrane Proteins/biosynthesis; Chromatin Immunoprecipitation; Chromosomes, Bacterial; DNA, Bacterial/metabolism; Escherichia coli K12/genetics; Escherichia coli K12/physiology; Escherichia coli Proteins/biosynthesis; Escherichia coli Proteins/metabolism; Gene Expression Regulation, Bacterial; Protein Binding; Regulon; Repressor Proteins/metabolism |
| edit table |
Significance
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Useful Materials and Methods
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IMPORTANT!: This track is for E. coli strain BW25113 but is found under MG1655 since the array used was intended for MG1655!
Annotations
<annotationlinks/>
Data
| Strain/Organism | Assay | Analyte | Variable Conditions | Notes | Links |
|---|---|---|---|---|---|
|
BW25113 |
ChIP-chip |
MntR |
This track is for E. coli strain BW25113 but is found under MG1655 since the array used was intended for MG1655. |
||
| edit table |
EcoliWiki Links
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See also
References
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