rraA:Quickview: Difference between revisions

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{{Tab On|Quickview|rraA}}{{Tab|Gene|rraA}}{{Tab|Gene Product(s)|rraA}}{{Tab|Expression|rraA}}{{Tab|Evolution|rraA}}{{Tab|On One Page|rraA}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[rraA:Gene|''rraA]]'' (synonyms: ''ECK3921, b3929, JW3900, menG, yiiA, yiiV'')<ref name='LIB:Riley_2006'/>
''rraA''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[rraA:Gene_Product(s)|RraA product]]<ref name='LIB:Riley_2006'/>: ribonuclease E (RNase E) inhibitor protein<ref name='LIB:Riley_2006'/>, B3929<ref name='LIB:EcoCyc10.6'/>, YiiV<ref name='LIB:EcoCyc10.6'/>, MenG<ref name='LIB:EcoCyc10.6'/>, RraA<ref name='LIB:EcoCyc10.6'/>, [[:Category:Complex:ribonuclease E inhibitor protein A|ribonuclease E inhibitor protein A]]<ref name='LIB:EcoCyc11.1'/>
''ECK3921, b3929, JW3900, menG, yiiA, yiiV''<ref name='LIB:Riley_2006'/>, yiiV''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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ribonuclease E inhibitor protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
ribonuclease E inhibitor protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:ribonuclease E inhibitor protein A|ribonuclease E inhibitor protein A]]<ref name='LIB:EcoCyc11.1'/>


Protein inhibitor of RNase E, modulates global mRNA abundance; trimeric<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''ribonuclease E (RNase E) inhibitor protein<ref name='LIB:Riley_2006'/>, B3929<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YiiV<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MenG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RraA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3921, JW3900, menG, yiiV, b3929''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:txn_units:rraA|rraA]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:rraA|rraA]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=rraA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11879]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001809&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=rraA&loc=MG1655%3A4117353..4116868,W3110%3A3517351..3517836,DH10B%3A4217050..4216565,BW2952%3A4006537..4007022]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4006537&end=4007022&gene=rraA&aa=mkydtselcdiyqedvnvveplfsnfggrasfggqiitvkcfedngllydlleqngrgrvlvvdgggsvrralvdaelarlavqneweglviygavrqvddleeldigiqamaaipvgaagegigesdvrvnfggvtffsgdhlyadntgiilsedpldie]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rraA+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=rraA]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
{{BacktoTop}}
 
rraA (menG) was previously, erroneously, reported to encode demethylmenaquinone methyltransferase, in Genbank U56082.  UbiE performs this final step, converting demethylmenaquinone to menaquinone.<ref name='LIB:EcoGene'/>
 




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==References==
==References==
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Latest revision as of 21:46, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

rraA

Gene Synonym(s)

ECK3921, b3929, JW3900, menG, yiiA, yiiV[1], yiiV

Product Desc.

ribonuclease E inhibitor protein[2][3];

Component of ribonuclease E inhibitor protein A[3]

Protein inhibitor of RNase E, modulates global mRNA abundance; trimeric[4]

Product Synonyms(s)

ribonuclease E (RNase E) inhibitor protein[1], B3929[2][1], YiiV[2][1], MenG[2][1], RraA[2][1] , ECK3921, JW3900, menG, yiiV, b3929

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rraA[2]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


rraA (menG) was previously, erroneously, reported to encode demethylmenaquinone methyltransferase, in Genbank U56082. UbiE performs this final step, converting demethylmenaquinone to menaquinone.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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