lptB:Quickview: Difference between revisions

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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''yhbG, ECK3190, b3201, JW3168''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''yhbG, ECK3190, b3201, JW3168''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, JW3168''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted transporter subunit: ATP-binding component of ABC superfamily<ref name='LIB:Riley_2006'/>, B3201<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhbG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''predicted transporter subunit: ATP-binding component of ABC superfamily<ref name='LIB:Riley_2006'/>, B3201<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhbG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3190, JW3168, yhbG, b3201''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://porteco.org/AjaxSearch.jsp?searchString=lptB&s=search PortEco search(lptB)]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_dna.php?gene=lptB&loc=MG1655:3341966..3342691,W3110:3343799..3344524,REL606:3279179..3279904,BW2952:3229114..3229839 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3229114&end=3229839&gene=lptB&aa= Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=lptB+AND+escherichia+coli Pubmed(lptB)]&nbsp;&nbsp;&nbsp; [http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=lptB Textpresso(lptB)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=lptB&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11680]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001623&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=lptB&loc=MG1655%3A3341966..3342691,W3110%3A3343799..3344524,REL606%3A3279179..3279904,BW2952%3A3229114..3229839]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3229114&end=3229839&gene=lptB&aa=matltaknlakaykgrrvvedvsltvnsgeivgllgpngagktttfymvvgivprdagniiiddddisllplhararrgigylpqeasifrrlsvydnlmavlqirddlsaeqredranelmeefhiehlrdsmgqslsggerrrveiaralaanpkfilldepfagvdpisvidikriiehlrdsglgvlitdhnvretlavcerayivsqghliahgtpteilqdehvkrvylgedfrl]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=lptB+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=lptB]]&nbsp;&nbsp;


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Latest revision as of 21:48, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

lptB

Gene Synonym(s)

yhbG, ECK3190, b3201, JW3168[1][2], JW3168

Product Desc.

LptB[2][3];

Component of YhbG/YhbN ABC transporter[2]; LptA/LptB ABC transporter[3]

Lipopolysaccharide export ABC transporter ATP-binding protein; LptBFG[4]

Product Synonyms(s)

predicted transporter subunit: ATP-binding component of ABC superfamily[1], B3201[2][1], YhbG[2][1] , ECK3190, JW3168, yhbG, b3201

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): lptB-rpoN-yhbH-ptsN-yhbJ[2], yhbG-rpoN-yhbH-ptsN-yhbJ, lptA-lptB[3]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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LptB depletion results in rifampicin/bile salts sensitivity, indicative of an outer membrane integrity defect. Reported to be essential based on depletion of ara-controlled expression (Sperandeo, 2006), however Baba, 2006, constructed a viable deletion strain. Binds TrxA (Kumar, 2004). RpoE regulon.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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