deoR:Quickview: Difference between revisions
Jump to navigation
Jump to search
/Volumes/r3/t3/ul/phpwikibots/trunk/touch_all_tables.php |
touch |
||
| Line 23: | Line 23: | ||
* ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. ** | * ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. ** | ||
* | * | ||
****************************************************************************************** --> | ****************************************************************************************** --> | ||
{| id="Z49aee394c3cc4" class=" tableEdit New_Quickview_Table" | {| id="Z49aee394c3cc4" class=" tableEdit New_Quickview_Table" | ||
| Line 33: | Line 33: | ||
!align=left {{table_heading_style}} |Gene Synonym(s) | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
|| | || | ||
''ECK0830, b0840, JW0824, nucR''<ref name='LIB:Riley_2006'/> | ''ECK0830, b0840, JW0824, nucR''<ref name='LIB:Riley_2006'/>, nucR'' | ||
|- | |- | ||
!align=left {{table_heading_style}} |Product Desc. | !align=left {{table_heading_style}} |Product Desc. | ||
| Line 43: | Line 43: | ||
!align=left {{table_heading_style}} |Product Synonyms(s) | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
|| | || | ||
DNA-binding transcriptional repressor<ref name='LIB:Riley_2006'/>, B0840<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NucR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DeoR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, transcriptional repressor for deo operon, tsx, nupG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ''DNA-binding transcriptional repressor<ref name='LIB:Riley_2006'/>, B0840<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NucR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DeoR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, transcriptional repressor for deo operon, tsx, nupG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0830, JW0824, nucR, b0840'' | ||
|- | |- | ||
!align=left {{table_heading_style}} |Function from GO | !align=left {{table_heading_style}} |Function from GO | ||
| Line 63: | Line 63: | ||
!align=left {{table_heading_style}} |Quick Links | !align=left {{table_heading_style}} |Quick Links | ||
|| | || | ||
[http://porteco.org/AjaxSearch.jsp?searchString=deoR&s=search | [[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=deoR&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10223]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000217&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=deoR&loc=MG1655%3A881957..881199,W3110%3A883156..882398,DH10B%3A935885..935127,REL606%3A875286..874528,BW2952%3A784167..784925]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=784167&end=784925&gene=deoR&aa=metrreerigqllqelkrsdklhlkdaaallgvsemtirrdlnnhsapvvllggyivleprsashyllsdqksrlveekrraaklaatlvepdqtlffdcgtttpwiieaidneipftavcyslntflalkekphcraflcggefhasnaifkpidfqqtlnnfcpdiafysaagvhvskgatcfnleelpvkhwamsmaqkhvlvvdhskfgkvrparmgdlkrfdivvsdccpedeyvkyaqtqriklmy]] [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=deoR+AND+escherichia+coli]] [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=deoR]] | ||
|- class="tableEdit_footer" | |- class="tableEdit_footer" | ||
Latest revision as of 21:51, 27 May 2013
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
| Standard Name |
deoR |
|---|---|
| Gene Synonym(s) |
ECK0830, b0840, JW0824, nucR[1], nucR |
| Product Desc. |
DeoR transcriptional repressor[2][3] Repressor for deo operon, nupG and tsx; binds deoxyribose-5-phosphate inducer[4] |
| Product Synonyms(s) |
DNA-binding transcriptional repressor[1], B0840[2][1], NucR[2][1], DeoR[2][1], transcriptional repressor for deo operon, tsx, nupG[2][1] , ECK0830, JW0824, nucR, b0840 |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links |
|
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
The deoR gene is found immediately upstream of the operon. DeoR encodes a repressor protein that negatively regulates the expression of the operon at the level of transcription. A deoR-deficient mutant has a high level of deoxyriboaldolase and pyrimidine nucleoside phosphorylase. [5] In deoR mutations, the repressor is absent and the colonies of the mutants grow more rapidly (Munch-Peterson, et al, Eur. J. Biochem 27: 208-215 (1972)).
References
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ Zeng, X & Saxild, HH (1999) Identification and characterization of a DeoR-specific operator sequence essential for induction of dra-nupC-pdp operon expression in Bacillus subtilis. J. Bacteriol. 181 1719-27 PubMed