caiF:Quickview: Difference between revisions
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* ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. ** | * ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. ** | ||
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!align=left {{table_heading_style}} |Gene Synonym(s) | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK0035, b0034, JW0033''<ref name='LIB:Riley_2006'/> | ''ECK0035, b0034, JW0033''<ref name='LIB:Riley_2006'/>, JW0033'' | ||
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!align=left {{table_heading_style}} |Product Desc. | !align=left {{table_heading_style}} |Product Desc. | ||
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!align=left {{table_heading_style}} |Product Synonyms(s) | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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DNA-binding transcriptional activator<ref name='LIB:Riley_2006'/>, B0034<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CaiF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ''DNA-binding transcriptional activator<ref name='LIB:Riley_2006'/>, B0034<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CaiF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0035, JW0033, b0034'' | ||
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!align=left {{table_heading_style}} |Function from GO | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left {{table_heading_style}} |Quick Links | !align=left {{table_heading_style}} |Quick Links | ||
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[http://ecoliwiki.net/tools/display_dna.php?gene=caiF&loc=MG1655 | [[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=caiF&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6088]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120002708&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=caiF&loc=MG1655%3A34300..34695,W3110%3A34300..34695,DH10B%3A34300..34695,REL606%3A38371..38766,BW2952%3A34300..34695]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=34300&end=34695&gene=caiF&aa=mklhtidistiliwpcliaskrviarllicetgvrmcegyvekplylliaewmmaenrwviareisihfdiehskavntltyilsevteiscevkmipnklegrgcqcqrlvkvvdideqiyarlrnnsreklvgvrktpripavpltelnreqkwqmmlsksmrr]] [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=caiF+AND+escherichia+coli]] [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=caiF]] | ||
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Latest revision as of 21:52, 27 May 2013
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
| Standard Name |
caiF |
|---|---|
| Gene Synonym(s) |
ECK0035, b0034, JW0033[1], JW0033 |
| Product Desc. |
CaiF transcriptional activator[2][3] Transcriptional activator of cai operon[4] |
| Product Synonyms(s) |
DNA-binding transcriptional activator[1], B0034[2][1], CaiF[2][1] , ECK0035, JW0033, b0034 |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links |
|
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
A 59 aa ORF yaaV (EG12706) was previously annotated upstream of caiF. yaaV has also been reported as a pseudogene, but the allelic variation, lack of homologs, rare codons, map position and poor RBS indicate it is not a gene and it has been removed.[4]
References
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.