pepA:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
Data loaded by TableEdit_Loader.
touch
 
(One intermediate revision by the same user not shown)
Line 29: Line 29:
*  
*  
****************************************************************************************** -->{{Evolution_homologs_table_help}}
****************************************************************************************** -->{{Evolution_homologs_table_help}}
{|   id="C46ac1c489da96"  class=" tableEdit Evolution_homologs_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="C46ac1c489da96"  class=" tableEdit Evolution_homologs_table"   
|- {{table heading style}}
|- {{table heading style}}
!|Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
Line 258: Line 258:
*  
*  
****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|   id="J46ac1c78852b8"  class=" tableEdit Gene_accessions_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="J46ac1c78852b8"  class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
Line 293: Line 293:
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
[http://pfam.janelia.org/family/PF00883 PF00883  Cytosol aminopeptidase family, catalytic domain]
[http://pfam.janelia.org/family/PF00883 PF00883  Cytosol aminopeptidase family, catalytic domain]
|
|
   
   
|-
|
[[EcoCyc]]
|
EcoCyc:EG10694
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG10694
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120000686
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB0688
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0013953
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  
Line 315: Line 350:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|   id="U46a8555ebc190"  class=" tableEdit Links_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="U46a8555ebc190"  class=" tableEdit Links_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Name!!URL!!Comments
!|Name!!URL!!Comments

Latest revision as of 08:38, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000005638 (score: 1.000; bootstrap: 99%)
  • ENSANGP00000010036 (score: 0.200)
  • ENSANGP00000018393 (score: 0.194)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000031416 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G30920 (score: 1.000; bootstrap: 100%)
  • AT4G30910 (score: 0.872)
  • AT2G24200 (score: 0.715)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000007860 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00037619 (score: 1.000; bootstrap: 94%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00002249 (score: 1.000; bootstrap: 96%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000022254 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000016401 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050417-177 (score: 1.000; bootstrap: 97%)
  • ZDB-CDNA-050417-178 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0231024 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0052351 (score: 1.000; bootstrap: 100%)
  • FBgn0035915 (score: 0.887)
  • FBgn0034132 (score: 0.206)
  • FBgn0033860 (score: 0.206)
  • FBgn0045770 (score: 0.191)
  • FBgn0052064 (score: 0.191)
  • FBgn0033868 (score: 0.188)
  • FBgn0034134 (score: 0.176)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA18184-PA (score: 1.000; bootstrap: 98%)
  • GA14907-PA (score: 0.543)
  • GA18403-PA (score: 0.520)
  • GA16651-PA (score: 0.475)
  • GA12219-PA (score: 0.475)
  • GA19547-PA (score: 0.212)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000028055 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000226299 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000007569 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000001024 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Mus musculus

  • MGI:1914238 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Oryza gramene

  • Q6K669 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000027448 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000004770 (score: 1.000; bootstrap: 99%)
  • ENSRNOP00000048929 (score: 0.464)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC13A115 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000160378 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00007227001 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000044902 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Shigella flexneri

PEPA

From SHIGELLACYC

E. coli O157

PEPA

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF02789 Cytosol aminopeptidase family, N-terminal domain

Panther (EcoliWiki Page)

PTHR11963:SF3

Superfamily (EcoliWiki Page)

SUPERFAMILY:52949

Superfamily (EcoliWiki Page)

SUPERFAMILY:53187

Pfam (EcoliWiki Page)

PF00883 Cytosol aminopeptidase family, catalytic domain

EcoCyc

EcoCyc:EG10694

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10694

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000686

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0688

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013953

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=pepA:Evolution&oldid=1392144"