rng:Evolution: Difference between revisions

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deleting Pfam from accessions table on evolution pages
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!|Organism!!Homologs (Statistics)!!Comments
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!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00575 PF00575  S1 RNA binding domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF10150 PF10150  Ribonuclease E/G family]
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[[EcoCyc]]
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EcoCyc:EG11299
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11299
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001272
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1276
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0010651
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:36, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000026539 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G04270 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000020550 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000018040 (score: 0.051)

From Inparanoid:20070104

Danio rerio

  • ZDB-CDNA-050522-68 (score: 1.000; bootstrap: 100%)
  • ZDB-GENE-030131-5005 (score: 0.919)
  • ZDB-CDNA-040930-2 (score: 0.140)
  • ZDB-GENE-040930-2 (score: 0.140)
  • ZDB-CDNA-041114-95 (score: 0.119)
  • ZDB-GENE-041114-95 (score: 0.119)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0031264 (score: 1.000; bootstrap: 59%)
  • FBgn0000181 (score: 0.095)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA15126-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000286104 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q6Z0E3 (score: 1.000; bootstrap: 100%)
  • Q69PQ8 (score: 0.784)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000027261 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

CAFA

From SHIGELLACYC

E. coli O157

CAFA

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:50249

Pfam (EcoliWiki Page)

PF00575 S1 RNA binding domain

Pfam (EcoliWiki Page)

PF10150 Ribonuclease E/G family

EcoCyc

EcoCyc:EG11299

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11299

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001272

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1276

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010651

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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