etp:Evolution: Difference between revisions

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deleting Pfam from accessions table on evolution pages
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!|Organism!!Homologs (Statistics)!!Comments
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!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF01451 PF01451  Low molecular weight phosphotyrosine protein phosphatase]
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[[EcoCyc]]
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EcoCyc:G6503
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG13727
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120003103
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB3491
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0003312
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:31, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000012280 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000011124 (score: 0.224)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000017940 (score: 1.000; bootstrap: 100%)
  • ENSAPMP00000031086 (score: 0.057)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G44620 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000005122 (score: 0.977)
  • ENSBTAP00000027314 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000010570 (score: 0.779)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00034592 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050327-12 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050327-12 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0040076 (score: 1.000; bootstrap: 100%)
  • FBgn0040077 (score: 1.000; bootstrap: 100%)
  • FBgn0051469 (score: 0.249)
  • FBgn0038655 (score: 0.108)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA16170-PA (score: 1.000; bootstrap: 100%)
  • GA16272-PA (score: 1.000; bootstrap: 100%)
  • GA12886-PA (score: 0.205)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000026345 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000272065 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:87881 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q6ZJ11 (score: 1.000; bootstrap: 100%)
  • Q84PD6 (score: 0.994)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000019951 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000007287 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000050003 (score: 0.128)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YPR073C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC10712c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000030833 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

YCCY

From SHIGELLACYC

E. coli O157

YCCY

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01451 Low molecular weight phosphotyrosine protein phosphatase

Superfamily (EcoliWiki Page)

SUPERFAMILY:52788

EcoCyc

EcoCyc:G6503

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13727

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003103

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3491

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003312

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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