prfA:Evolution: Difference between revisions

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!|Organism!!Homologs (Statistics)!!Comments
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!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF03462 PFAM:PF03462]
[http://pfam.janelia.org/family/PF03462 PF03462 PCRF domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00472 PF00472  RF-1 domain]
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[[EcoCyc]]
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EcoCyc:EG10761
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10761
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000752
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0754
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0004066
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:32, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000013776 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G47020 (score: 1.000; bootstrap: 75%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000012219 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000016261 (score: 0.089)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00039181 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00020993 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000000769 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000007157 (score: 0.139)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050220-8 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050220-8 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0185395 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0032486 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA19071-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000022101 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000027347 (score: 0.091)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000229760 (score: 1.000; bootstrap: 100%)
  • ENSP00000318184 (score: 0.934)
  • ENSP00000326351 (score: 0.113)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000025081 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000018725 (score: 0.444)
  • ENSMMUP00000026571 (score: 0.294)
  • ENSMMUP00000023630 (score: 0.137)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000010552 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000018475 (score: 0.110)

From Inparanoid:20070104

Mus musculus

  • MGI:1918830 (score: 1.000; bootstrap: 100%)
  • MGI:2384815 (score: 0.140)

From Inparanoid:20070104

Oryza gramene

  • Q6I547 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000031947 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000009897 (score: 0.111)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000025398 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YGL143C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC2F77 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000129372 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000148055 (score: 0.083)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00014302001 (score: 1.000; bootstrap: 100%)
  • GSTENP00031834001 (score: 0.084)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000013952 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

PRFA

From SHIGELLACYC

E. coli O157

PRFA

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF03462 PCRF domain

Panther (EcoliWiki Page)

PTHR11075:SF9

Superfamily (EcoliWiki Page)

SUPERFAMILY:75620

Pfam (EcoliWiki Page)

PF00472 RF-1 domain

EcoCyc

EcoCyc:EG10761

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10761

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000752

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0754

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004066

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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