copA:Evolution: Difference between revisions

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!|Organism!!Homologs (Statistics)!!Comments
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="E46aba4426a904"  class=" tableEdit Gene_accessions_table"   
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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00403 PFAM:PF00403]
[http://pfam.janelia.org/family/PF00702 PF00702  haloacid dehalogenase-like hydrolase]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00403 PF00403  Heavy-metal-associated domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00403 PF00403  Heavy-metal-associated domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00122 PF00122  E1-E2 ATPase]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=56784 SUPERFAMILY:56784]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=81653 SUPERFAMILY:81653]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=81665 SUPERFAMILY:81665]
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[[EcoCyc]]
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EcoCyc:G6260
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG13246
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120002868
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB3035
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0001681
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:30, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000008866 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000021869 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G44790 (score: 1.000; bootstrap: 91%)
  • AT1G63440 (score: 0.281)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000013674 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000013214 (score: 0.212)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00040040 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00000834 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000006351 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000025432 (score: 0.433)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000014894 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0218568 (score: 1.000; bootstrap: 100%)
  • DDB0168129 (score: 0.144)
  • DDB0217251 (score: 0.144)
  • DDB0190385 (score: 0.079)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0030343 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000027449 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000012813 (score: 0.450)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000242839 (score: 1.000; bootstrap: 100%)
  • ENSP00000345728 (score: 0.452)
  • ENSP00000355352 (score: 0.314)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000016907 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000021711 (score: 0.364)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000004937 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000013156 (score: 0.452)

From Inparanoid:20070104

Mus musculus

  • MGI:103297 (score: 1.000; bootstrap: 100%)
  • MGI:99400 (score: 0.447)

From Inparanoid:20070104

Oryza gramene

  • Q6H7M3 (score: 1.000; bootstrap: 95%)
  • Q6JAG2 (score: 0.417)
  • Q6JAH7 (score: 0.402)
  • Q6JAG3 (score: 0.369)
  • Q6H6Z1 (score: 0.255)
  • Q7XU05 (score: 0.247)
  • Q655X4 (score: 0.186)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000018319 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000003395 (score: 0.409)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YDR270W (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC29A31 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000152440 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000148707 (score: 0.294)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00020077001 (score: 1.000; bootstrap: 100%)
  • GSTENP00017010001 (score: 0.219)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000044753 (score: 1.000; bootstrap: 71%)
  • ENSXETP00000009760 (score: 0.349)

From Inparanoid:20070104

Shigella flexneri

YBAR

From SHIGELLACYC

E. coli O157

YBAR

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00702 haloacid dehalogenase-like hydrolase

Pfam (EcoliWiki Page)

PF00403 Heavy-metal-associated domain

Pfam (EcoliWiki Page)

PF00403 Heavy-metal-associated domain

Pfam (EcoliWiki Page)

PF00122 E1-E2 ATPase

Panther (EcoliWiki Page)

PTHR24093:SF35

Superfamily (EcoliWiki Page)

SUPERFAMILY:55008

Superfamily (EcoliWiki Page)

SUPERFAMILY:55008

Superfamily (EcoliWiki Page)

SUPERFAMILY:56784

Superfamily (EcoliWiki Page)

SUPERFAMILY:81653

Superfamily (EcoliWiki Page)

SUPERFAMILY:81665

EcoCyc

EcoCyc:G6260

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13246

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002868

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3035

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001681

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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