pcm:Evolution: Difference between revisions

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!|Organism!!Homologs (Statistics)!!Comments
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!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11579:SF0 PTHR11579:SF0]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01135 PFAM:PF01135]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53335 SUPERFAMILY:53335]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11579:SF0 PTHR11579:SF0]
[http://pfam.janelia.org/family/PF01135 PF01135  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)]
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[[EcoCyc]]
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EcoCyc:EG10689
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10689
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000682
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0683
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0009006
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:35, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000020776 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000008738 (score: 1.000; bootstrap: 100%)
  • ENSAPMP00000002493 (score: 0.343)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G48330 (score: 1.000; bootstrap: 100%)
  • AT5G50240 (score: 0.292)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000013464 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00030890 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00003954 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000000571 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000014932 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-1738 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-2678 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040801-279 (score: 0.660)
  • ZDB-GENE-990415-134 (score: 0.660)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0214947 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0015276 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA15271-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000007384 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000020199 (score: 0.565)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000239377 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000020973 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:97502 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q6ZJ17 (score: 1.000; bootstrap: 100%)
  • Q7XUQ2 (score: 0.671)
  • Q43209 (score: 0.671)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000031911 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000019623 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC8698 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000151732 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000134699 (score: 0.528)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00032200001 (score: 1.000; bootstrap: 100%)
  • GSTENP00035418001 (score: 0.639)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000026905 (score: 1.000; bootstrap: 87%)

From Inparanoid:20070104

Shigella flexneri

PCM

From SHIGELLACYC

E. coli O157

PCM

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Panther (EcoliWiki Page)

PTHR11579:SF0

Superfamily (EcoliWiki Page)

SUPERFAMILY:53335

Pfam (EcoliWiki Page)

PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)

EcoCyc

EcoCyc:EG10689

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10689

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000682

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0683

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009006

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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